YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30256794, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	235 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30256794, gi|....

Description	E-value	Query Range	Subject Range
gi\|229127580, gi... - gi\|229127580\|ref\|ZP_04256571.1\| hypothetical protein bcere0015_20300 [Bacillus cereus BDRD-Cer4], gi... gi\|229043920, gi... - gi\|229043920\|ref\|ZP_04191616.1\| hypothetical protein bcere0027_19620 [Bacillus cereus AH676], gi\|228... gi\|29895822, gi\|... - gi\|30020272\|ref\|NP_831903.1\| nitric oxide-dependent regulator DnrN [Bacillus cereus ATCC 14579], gi\|...	308.0	[0..1]	[235..1]
gi\|49477527, gi\|... - gi\|49477527\|ref\|YP_036300.1\| cell division and morphogenesis-related protein [Bacillus thuringiensis...	305.0	[0..1]	[235..1]
gi\|47566916, gi\|... - gi\|47566916\|ref\|ZP_00237634.1\| ScdA protein [Bacillus cereus G9241], gi\|47556545\|gb\|EAL14878.1\| ScdA...	301.0	[0..1]	[235..1]
gi\|52080458, gi\|... - gi\|52785839\|ref\|YP_091668.1\| hypothetical protein BLi02085 [Bacillus licheniformis ATCC 14580], gi\|5...	289.0	[0..1]	[235..1]
gi\|31580616 - gi\|31580616\|gb\|AAP51018.1\| putative ScdA [Bacillus licheniformis]	288.0	[0..1]	[235..1]
gi\|72122218, gi\|... - gi\|73538881\|ref\|YP_299248.1\| cell morphogenesis/cell wall metabolism regulator [Ralstonia eutropha J...	278.0	[0..7]	[235..4]
gi\|17549179 - gi\|17549179\|ref\|NP_522519.1\| cell morphogenesis/cell wall metabolism regulator [Ralstonia solanacear... gi\|17431431 - gi\|17431431\|emb\|CAD18109.1\| probable hypothetical protein [Ralstonia solanacearum GMI1000]	278.0	[0..8]	[234..5]
gi\|113530759, gi... - gi\|116696260\|ref\|YP_841836.1\| cell morphogenesis/cell wall metabolism regulator [Ralstonia eutropha ...	275.0	[0..7]	[235..4]
gi\|11071577 - gi\|11071577\|emb\|CAC14589.1\| DnrN protein [Pseudomonas stutzeri]	275.0	[0..7]	[233..6]
gi\|42629025 - gi\|42629025\|ref\|ZP_00154575.1\| COG2846: Regulator of cell morphogenesis and NO signaling [Haemophilu...	274.0	[0..7]	[234..4]

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Predicted Domain #1

Region A:
Residues: [1-68]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEHTFTETSI VGEIVTQFPK ASDLFKSYRI DFCCGGNKPL IDAIHERNLS ATEVITELNT  60
   61 LYHNTKRL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	18.468521
Match:	PF04405.5
Description:	No description for PF04405.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [69-235]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NESEIDWKNA SYRELIDYVI HKHHRYLNEE LPQLSPYVTK VLRVHGANQP HLAKIHKLFH  60
   61 ELKMELEQHL IKEETEDFPL ILEFEKNPTD ENYAKLRKVV DELENEHNHA GNIIKELRKV 120
  121 TNDFTPPEGA CGTYRLVYNR LEALESDLFE HIHLENNILF PRAITRA

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.4
Match:	2p0nA
Description:	No description for 2p0nA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits