YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30256978, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	79 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30256978, gi|....

Description	E-value	Query Range	Subject Range
gi\|228856273, gi... - gi\|228903312\|ref\|ZP_04067443.1\| Spore germination protein GerPF-like protein [Bacillus thuringiensis... gi\|74493638, gi\|... - gi\|75758872\|ref\|ZP_00738984.1\| Spore germination protein PF [Bacillus thuringiensis serovar israelen... gi\|229181122, gi... - gi\|229181122\|ref\|ZP_04308454.1\| Spore germination protein GerPF-like protein [Bacillus cereus 172560...	97.0	[0..9]	[78..7]
gi\|29898424, gi\|... - gi\|30022865\|ref\|NP_834496.1\| spore germination protein PF [Bacillus cereus ATCC 14579], gi\|29898424\|...	97.0	[0..9]	[78..5]
gi\|42783997, gi\|... - gi\|42783997\|ref\|NP_981244.1\| spore germination protein GerPF-like protein [Bacillus cereus ATCC 1098...	96.0	[0..9]	[78..7]
gi\|47565232, gi\|... - gi\|47565232\|ref\|ZP_00236275.1\| spore germination protein PF-related protein [Bacillus cereus G9241],...	95.0	[0..9]	[78..1]
gi\|196044025, gi... - gi\|196044025\|ref\|ZP_03111262.1\| spore germination protein GerPF-like protein [Bacillus cereus 03BB10... gi\|196041440, gi... - gi\|196041440\|ref\|ZP_03108733.1\| spore germination protein GerPF-like protein [Bacillus cereus NVH059... gi\|51974173, gi\|... - gi\|52140704\|ref\|YP_086124.1\| spore germination protein [Bacillus cereus E33L], gi\|51974173\|gb\|AAU157... gi\|225785769, gi... - gi\|225866792\|ref\|YP_002752170.1\| spore germination protein GerPF-like protein [Bacillus cereus 03BB1...	93.0	[0..9]	[78..1]
gi\|47778357, gi\|... - gi\|47778357\|ref\|YP_022714.1\| spore germination protein gerpf-like protein [Bacillus anthracis str. '... gi\|30259541, gi\|... - gi\|30264866\|ref\|NP_847243.1\| spore germination protein GerPF-like protein [Bacillus anthracis str. A... gi\|65322165 - gi\|65322165\|ref\|ZP_00395124.1\| hypothetical protein Bant_01005698 [Bacillus anthracis str. A2012] gi\|228917453, gi... - gi\|228917453\|ref\|ZP_04081003.1\| Spore germination protein GerPF-like protein [Bacillus thuringiensis... gi\|228948547, gi... - gi\|228948547\|ref\|ZP_04110827.1\| Spore germination protein GerPF-like protein [Bacillus thuringiensis... gi\|228929851, gi... - gi\|228929851\|ref\|ZP_04092866.1\| Spore germination protein GerPF-like protein [Bacillus thuringiensis... gi\|229124365, gi... - gi\|229124365\|ref\|ZP_04253554.1\| Spore germination protein GerPF-like protein [Bacillus cereus 95/820...	93.0	[0..9]	[78..7]
gi\|218906028, gi... - gi\|218906028\|ref\|YP_002453862.1\| spore germination protein GerPF-like protein [Bacillus cereus AH820... gi\|196033207, gi... - gi\|196033207\|ref\|ZP_03100620.1\| spore germination protein GerPF-like protein [Bacillus cereus W], gi... gi\|190568341, gi... - gi\|190568341\|ref\|ZP_03021249.1\| spore germination protein GerPF-like protein [Bacillus anthracis Tsi... gi\|177651263, gi... - gi\|177651263\|ref\|ZP_02934094.1\| spore germination protein GerPF-like protein [Bacillus anthracis str... gi\|170705495, gi... - gi\|170705495\|ref\|ZP_02895959.1\| spore germination protein GerPF-like protein [Bacillus anthracis str... gi\|170685886, gi... - gi\|170685886\|ref\|ZP_02877109.1\| spore germination protein GerPF-like protein [Bacillus anthracis str... gi\|167638037, gi... - gi\|167638037\|ref\|ZP_02396315.1\| spore germination protein GerPF-like protein [Bacillus anthracis str... gi\|167633962, gi... - gi\|167633962\|ref\|ZP_02392285.1\| spore germination protein GerPF-like protein [Bacillus anthracis str... gi\|49480730, gi\|... - gi\|49480730\|ref\|YP_038844.1\| spore germination protein [Bacillus thuringiensis serovar konkukian str... gi\|164714542, gi... - gi\|165869713\|ref\|ZP_02214371.1\| spore germination protein GerPF-like protein [Bacillus anthracis str... gi\|254725172 - gi\|254725172\|ref\|ZP_05186955.1\| spore germination protein gerpf-like protein [Bacillus anthracis str... gi\|254687606 - gi\|254687606\|ref\|ZP_05151462.1\| spore germination protein gerpf-like protein [Bacillus anthracis str... gi\|229603535, gi... - gi\|229603535\|ref\|YP_002869071.1\| spore germination protein GerPF-like protein [Bacillus anthracis st... gi\|227004382, gi... - gi\|227817593\|ref\|YP_002817602.1\| spore germination protein GerPF-like protein [Bacillus anthracis st... gi\|49187683, gi\|... - gi\|49187683\|ref\|YP_030936.1\| spore germination protein GerPF-like protein [Bacillus anthracis str. S... gi\|254757290 - gi\|254757290\|ref\|ZP_05209317.1\| spore germination protein gerpf-like protein [Bacillus anthracis str... gi\|21402844 - ref\|NP_658829.1\| hypothetical protein BA_5469 [Bacillus anthracis str. A2012] gi\|254754457 - gi\|254754457\|ref\|ZP_05206492.1\| spore germination protein gerpf-like protein [Bacillus anthracis str... gi\|254741945 - gi\|254741945\|ref\|ZP_05199632.1\| spore germination protein gerpf-like protein [Bacillus anthracis str... gi\|254736910 - gi\|254736910\|ref\|ZP_05194616.1\| spore germination protein gerpf-like protein [Bacillus anthracis str...	92.0	[0..9]	[78..1]
gi\|228926282, gi... - gi\|228926282\|ref\|ZP_04089356.1\| spore germination protein gerPF [Bacillus thuringiensis serovar pond... gi\|65318522 - gi\|65318522\|ref\|ZP_00391481.1\| hypothetical protein Bant_01001776 [Bacillus anthracis str. A2012] gi\|228845758, gi... - gi\|228913819\|ref\|ZP_04077444.1\| spore germination protein gerPF [Bacillus thuringiensis serovar puls... gi\|229090186, gi... - gi\|229090186\|ref\|ZP_04221434.1\| spore germination protein gerPF [Bacillus cereus Rock3-42], gi\|22869... gi\|228944852, gi... - gi\|228944852\|ref\|ZP_04107215.1\| spore germination protein gerPF [Bacillus thuringiensis serovar mont... gi\|229183446, gi... - gi\|229183446\|ref\|ZP_04310671.1\| spore germination protein gerPF [Bacillus cereus BGSC 6E1], gi\|22860... gi\|229120767, gi... - gi\|229120767\|ref\|ZP_04250010.1\| spore germination protein gerPF [Bacillus cereus 95/8201], gi\|228662... gi\|118476728, gi... - gi\|118476728\|ref\|YP_893879.1\| spore germination protein PF [Bacillus thuringiensis str. Al Hakam], g...	91.0	[0..9]	[79..4]

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Predicted Domain #1

Region A:
Residues: [1-79]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIVKWVKTMP SVVGNLVVQN SNGSFNLGDF YNVSPKENTK AYNGSGASNV GFVVNTFNGV  60
   61 SATNTFDSDL ADQNQVGTA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits