YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30258531, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	309 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30258531, gi|....

Description	E-value	Query Range	Subject Range
gi\|75763138, gi\|... - gi\|75763138\|ref\|ZP_00742911.1\| Dihydroorotate dehydrogenase, catalytic subunit [Bacillus thuringiens... PYRDB_BACC2 - Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit OS=Bacillus cereus (strain G9842) GN=pyrD... PYRDB_BACCR - Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit OS=Bacillus cereus (strain ATCC 14579 / D...	2.0E-61	[1..309]	[1..309]
PYRDB_BACWK - Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit OS=Bacillus weihenstephanensis (strain KB...	2.0E-61	[1..309]	[1..309]
gi\|47569512, gi\|... - gi\|47569512\|ref\|ZP_00240192.1\| dihydroorotate dehydrogenase [Bacillus cereus G9241], gi\|47553841\|gb\|... gi\|206733784, gi... - gi\|206971012\|ref\|ZP_03231963.1\| dihydroorotate oxidase [Bacillus cereus AH1134], gi\|206733784\|gb\|EDZ...	3.0E-61	[1..309]	[1..309]
PYRDB_BACCN - Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit OS=Bacillus cytotoxicus (strain DSM 22905...	4.0E-61	[1..309]	[1..309]
gi\|221322949 - gi\|221322949\|ref\|ZP_03604243.1\| dihydroorotate dehydrogenase 1B [Bacillus subtilis subsp. subtilis s... gi\|221313753 - gi\|221313753\|ref\|ZP_03595558.1\| dihydroorotate dehydrogenase 1B [Bacillus subtilis subsp. subtilis s... gi\|221318677 - gi\|221318677\|ref\|ZP_03599971.1\| dihydroorotate dehydrogenase 1B [Bacillus subtilis subsp. subtilis s... PYRD_BACSU, PYRD... - Dihydroorotate dehydrogenase, catalytic subunit OS=Bacillus subtilis GN=pyrD PE=1 SV=1, Dihydroorota... PYRDB_BACSU - Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit OS=Bacillus subtilis (strain 168) GN=pyrD...	3.0E-60	[4..309]	[2..310]
gi\|52080156, gi\|... - gi\|52080156\|ref\|YP_078947.1\| dihydroorotate dehydrogenase 1B [Bacillus licheniformis ATCC 14580], gi...	5.0E-60	[4..309]	[2..310]
gi\|89086681, gi\|... - gi\|89098719\|ref\|ZP_01171601.1\| dihydroorotate dehydrogenase [Bacillus sp. NRRL B-14911], gi\|89086681...	1.0E-59	[1..306]	[1..306]
PYRDB_LISIN - Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit OS=Listeria innocua serovar 6a (strain CL... PYRD_LISIN, PYRD... - Dihydroorotate dehydrogenase OS=Listeria innocua GN=pyrD PE=3 SV=1, Dihydroorotate dehydrogenase B (...	1.0E-59	[1..299]	[1..299]
PYRDB_LISMF - Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit OS=Listeria monocytogenes serotype 4b (st... gi\|47018571, gi\|... - gi\|47093070\|ref\|ZP_00230848.1\| dihydroorotate dehydrogenase [Listeria monocytogenes str. 4b H7858], ... gi\|133726775, gi... - gi\|153167676\|ref\|ZP_01927780.1\| dihydroorotate dehydrogenase [Listeria monocytogenes FSL N1-017], gi... gi\|254852739 - gi\|254852739\|ref\|ZP_05242087.1\| dihydroorotate dehydrogenase 1B [Listeria monocytogenes FSL R2-503] gi\|254826125 - gi\|254826125\|ref\|ZP_05231126.1\| dihydroorotate dehydrogenase 1B [Listeria monocytogenes FSL J1-194] gi\|254994290 - gi\|254994290\|ref\|ZP_05276480.1\| dihydroorotate dehydrogenase 1B [Listeria monocytogenes FSL J2-064] gi\|254878049 - gi\|254878049\|ref\|ZP_05250759.1\| dihydroorotate dehydrogenase 1B [Listeria monocytogenes FSL J2-071] gi\|255522430 - gi\|255522430\|ref\|ZP_05389667.1\| dihydroorotate dehydrogenase 1B [Listeria monocytogenes FSL J1-175]	3.0E-59	[1..299]	[1..299]

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Predicted Domain #1

Region A:
Residues: [1-309]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRLQVELPG LSLKNPIIPA SGCFGFGREY AQFYDLSVLG SIMIKATTEQ PRYGNPTPRV  60
   61 AETPGGMLNA IGLQNPGLEK VMNSELPWLE QFDLPIIANV AGSQAEDYVA VAKEISKAPN 120
  121 VHALELNISC PNVKTGGIAF GTNPEIAADL TKRVKEVSEV PVYVKLSPNV ANIVEIAKAI 180
  181 ENAGADGLTM INTLLGMRLD LKTAKPILAN RTGGLSGPAI KPVAIRMVHE VSQAVNIPII 240
  241 GMGGIETAED VIEFFYAGAS AVAVGTANFI DPFVCPTIIE ELPALLDELG FDHISECQGR 300
  301 SWKQTCHSR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	56.39794
Match:	1ep1A
Description:	Dihydroorotate dehydrogenase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
dihydroorotate dehydrogenase activity	2.73800716363956	bayes_pls_golite062009
dihydroorotate oxidase activity	2.35584458985229	bayes_pls_golite062009
catalytic activity	1.94749091175302	bayes_pls_golite062009
dihydropyrimidine dehydrogenase (NADP+) activity	1.76080169529176	bayes_pls_golite062009
oxidoreductase activity	1.34004057547793	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor	0.708198550325532	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: