YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30264001, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	163 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30264001, gi|....

Description	E-value	Query Range	Subject Range
COAD_PHODP - Phosphopantetheine adenylyltransferase OS=Photobacterium damsela subsp. piscicida GN=coaD PE=3 SV=1	8.0E-43	[1..158]	[1..158]
gi\|71556883, gi\|... - gi\|71736330\|ref\|YP_276889.1\| phosphopantetheine adenylyltransferase [Pseudomonas syringae pv. phaseo...	1.0E-41	[3..160]	[30..187]
COAD_EXIS2 - Phosphopantetheine adenylyltransferase OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / ...	1.0E-41	[1..162]	[1..162]
COAD_SHESR - Phosphopantetheine adenylyltransferase OS=Shewanella sp. (strain MR-7) GN=coaD PE=3 SV=1 COAD_SHESM - Phosphopantetheine adenylyltransferase OS=Shewanella sp. (strain MR-4) GN=coaD PE=3 SV=1	1.0E-41	[1..159]	[1..159]
COAD_SHEDO - Phosphopantetheine adenylyltransferase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / D...	1.0E-41	[1..158]	[1..158]
COAD_PSEAE - Phosphopantetheine adenylyltransferase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PR... COAD_PSEAB - Phosphopantetheine adenylyltransferase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=coaD PE=3 SV... gi\|94414802 - gi\|94414802\|ref\|ZP_01294656.1\| hypothetical protein PaerP_01003382 [Pseudomonas aeruginosa PA7] gi\|84318612, gi\|... - gi\|84318612\|ref\|ZP_00967034.1\| COG0669: Phosphopantetheine adenylyltransferase [Pseudomonas aerugino... gi\|126196839, gi... - gi\|84324448\|ref\|ZP_00972506.1\| COG0669: Phosphopantetheine adenylyltransferase [Pseudomonas aerugino... COAD_PSEAE - Phosphopantetheine adenylyltransferase OS=Pseudomonas aeruginosa GN=coaD PE=3 SV=1 gi\|107099347 - gi\|107099347\|ref\|ZP_01363265.1\| hypothetical protein PaerPA_01000359 [Pseudomonas aeruginosa PACS2] COAD_PSEA8 - Phosphopantetheine adenylyltransferase OS=Pseudomonas aeruginosa (strain LESB58) GN=coaD PE=3 SV=1	2.0E-41	[3..160]	[2..159]
COAD_SHESA - Phosphopantetheine adenylyltransferase OS=Shewanella sp. (strain ANA-3) GN=coaD PE=3 SV=1	2.0E-41	[1..159]	[1..159]
gi\|89076365, gi\|... - gi\|89076365\|ref\|ZP_01162698.1\| phosphopantetheine adenylyltransferase [Photobacterium sp. SKA34], gi...	2.0E-41	[1..158]	[1..158]
gi\|90580914, gi\|... - gi\|90580914\|ref\|ZP_01236716.1\| phosphopantetheine adenylyltransferase [Vibrio angustum S14], gi\|9043...	2.0E-41	[1..160]	[1..160]
COAD_IDILO - Phosphopantetheine adenylyltransferase OS=Idiomarina loihiensis GN=coaD PE=3 SV=1 COAD_IDILO - Phosphopantetheine adenylyltransferase OS=Idiomarina loihiensis (strain ATCC BAA-735 / DSM 15497 / L...	3.0E-41	[1..158]	[1..158]

Back

Predicted Domain #1

Region A:
Residues: [1-163]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSIAISSGS FDPITLGHLD IIKRGAKVFD EVYVVVLNNS SKKPFFSVEE RLDLIREATK  60
   61 DIPNVKVDSH SGLLVEYAKM RNANAILRGL RAVSDFEYEM QITSMNRKLD ENIETFFIMT 120
  121 NNQYSFLSSS IVKEVARYGG SVVDLVPPVV ERALKEKFQT PLK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	37.69897
Match:	1o6bA
Description:	Crystal structure of phosphopantetheine adenylyltransferase with ADP
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
pantetheine-phosphate adenylyltransferase activity	3.03187936898064	bayes_pls_golite062009
pantoate-beta-alanine ligase activity	2.81193878035427	bayes_pls_golite062009
catalytic activity	2.74718220535323	bayes_pls_golite062009
ligase activity, forming carbon-oxygen bonds	1.62370757945153	bayes_pls_golite062009
ligase activity, forming aminoacyl-tRNA and related compounds	1.62370757945153	bayes_pls_golite062009
adenylyltransferase activity	1.61625530385033	bayes_pls_golite062009
aminoacyl-tRNA ligase activity	1.61089358601097	bayes_pls_golite062009
ligase activity	1.15322915814026	bayes_pls_golite062009
nicotinate-nucleotide adenylyltransferase activity	0.46461802137308	bayes_pls_golite062009
nicotinamide-nucleotide adenylyltransferase activity	0.21096109874233	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: