YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30264010, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	332 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30264010, gi|....

Description	E-value	Query Range	Subject Range
gi\|229192147, gi... - gi\|229192147\|ref\|ZP_04319115.1\| Formamidase [Bacillus cereus ATCC 10876], gi\|228591354\|gb\|EEK49205.1... AMIF_BACCR - Formamidase OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NR... gi\|229152137, gi... - gi\|229152137\|ref\|ZP_04280331.1\| Formamidase [Bacillus cereus m1550], gi\|228631329\|gb\|EEK87964.1\| For... AMIF_BACC4 - Formamidase OS=Bacillus cereus (strain B4264) GN=amiF PE=3 SV=1 gi\|229180214, gi... - gi\|229180214\|ref\|ZP_04307558.1\| Formamidase [Bacillus cereus 172560W], gi\|228603423\|gb\|EEK60900.1\| F... gi\|229071438, gi... - gi\|229071438\|ref\|ZP_04204660.1\| Formamidase [Bacillus cereus F65185], gi\|228711729\|gb\|EEL63682.1\| Fo... gi\|229129216, gi... - gi\|229129216\|ref\|ZP_04258189.1\| Formamidase [Bacillus cereus BDRD-Cer4], gi\|228654453\|gb\|EEL10318.1\|... gi\|228805535, gi... - gi\|228954215\|ref\|ZP_04116243.1\| Formamidase [Bacillus thuringiensis serovar kurstaki str. T03a001], ...	3.0E-82	[1..332]	[1..332]
gi\|228792694, gi... - gi\|228966960\|ref\|ZP_04127998.1\| Formamidase [Bacillus thuringiensis serovar sotto str. T04001], gi\|2... gi\|74490425, gi\|... - gi\|75762091\|ref\|ZP_00741997.1\| Amidase [Bacillus thuringiensis serovar israelensis ATCC 35646], gi\|7... AMIF_BACC2 - Formamidase OS=Bacillus cereus (strain G9842) GN=amiF PE=3 SV=1 gi\|228857189, gi... - gi\|228902445\|ref\|ZP_04066599.1\| Formamidase [Bacillus thuringiensis IBL 4222], gi\|228857189\|gb\|EEN01...	1.0E-80	[1..332]	[1..332]
gi\|241906880, gi... - gi\|241906880\|ref\|ZP_04791461.1\| Formamidase [Desulfovibrio vulgaris RCH1], gi\|241880693\|gb\|EER80139.... AMIF_DESVH - Formamidase OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=amiF PE=3 ... AMIF_DESVV - Formamidase OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=amiF PE=3 SV=1	2.0E-75	[1..326]	[1..327]
AMIF_HELPY - Formamidase OS=Helicobacter pylori GN=amiF PE=1 SV=1 AMIF_HELPY - Formamidase OS=Helicobacter pylori (strain ATCC 700392 / 26695) GN=amiF PE=1 SV=1	2.0E-75	[1..326]	[1..327]
AMIF_HELPH - Formamidase OS=Helicobacter pylori (strain HPAG1) GN=amiF PE=3 SV=1	7.0E-75	[1..326]	[1..327]
AMIF_HELPJ - Formamidase OS=Helicobacter pylori (strain J99 / ATCC 700824) GN=amiF PE=3 SV=1 gi\|7463827 - gi\|7463827\|pir\|\|C71842 aliphatic amidase - Helicobacter pylori (strain J99)	8.0E-75	[1..326]	[1..327]
AMIF_HELAH - Formamidase OS=Helicobacter acinonychis (strain Sheeba) GN=amiF PE=3 SV=1	1.0E-71	[1..326]	[1..327]
gi\|62461692 - gi\|62461692\|gb\|AAX83004.1\| aliphatic amidase [Rhodococcus rhodochrous] gi\|85062816 - gi\|85062816\|gb\|ABC69239.1\| amidase [Nocardia sp. YS-2002]	3.0E-69	[5..332]	[4..345]
AMIE_GEOSE - Aliphatic amidase OS=Geobacillus stearothermophilus PE=1 SV=1	5.0E-69	[5..329]	[4..342]
gi\|78062692, gi\|... - gi\|78062692\|ref\|YP_372600.1\| acylamide amidohydrolase [Burkholderia sp. 383], gi\|77970577\|gb\|ABB1195...	3.0E-68	[5..331]	[4..344]

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Predicted Domain #1

Region A:
Residues: [1-332]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSSGSMVKP ISGFLTALIQ YPVPVVESRA DIDKQIKQII KTIHSTKAGY PGLELIVFPE  60
   61 YSTQGLNTKK WTTEEFLCTV PGPETDLFAE ACKESEVYGV FSIMERNPDG GEPYNTAIII 120
  121 DPQGEMILKY RKLNPWVPVE PWKAGDLGLP VCDGPGGSKL AVCICHDGMF PEVAREAAYK 180
  181 GANVLIRISG YSTQVSEQWM LTNRSNAWQN LMYTLSVNLA GYDGVFYYFG EGQVCNFDGT 240
  241 TLVQGHRNPW EIVTAEVYPE LADQARLGWG LENNIYNLGS RGYVATPGGV KENPYTFVKD 300
  301 LAEGKYKVPW EDEIKVKDGT IYGYPVKKTI HS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	77.0
Match:	2dyuA
Description:	No description for 2dyuA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits