YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30264659, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	239 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30264659, gi|....

Description	E-value	Query Range	Subject Range
gi\|10175779, gi\|... - gi\|15615719\|ref\|NP_244023.1\| two-component response regulator involved in phosphate regulation [Baci... gi\|25300880 - pir\|\|E84044 two-component response regulator involved in phosphate regulation phoP [imported] - Baci...	3.0E-66	[1..239]	[1..239]
gi\|221242108, gi... - gi\|222098050\|ref\|YP_002532107.1\| DNA-binding response regulator PhoP [Bacillus cereus Q1], gi\|221242... gi\|42783766, gi\|... - gi\|42783766\|ref\|NP_981013.1\| DNA-binding response regulator PhoP [Bacillus cereus ATCC 10987], gi\|42... gi\|228584759, gi... - gi\|229198737\|ref\|ZP_04325435.1\| Alkaline phosphatase synthesis transcriptional regulatory protein ph...	5.0E-63	[1..239]	[1..239]
gi\|89084904, gi\|... - gi\|89100385\|ref\|ZP_01173249.1\| PhoP [Bacillus sp. NRRL B-14911], gi\|89084904\|gb\|EAR64041.1\| PhoP [Ba...	5.0E-63	[1..237]	[1..237]
gi\|228590629, gi... - gi\|229192790\|ref\|ZP_04319748.1\| Alkaline phosphatase synthesis transcriptional regulatory protein ph... gi\|229180908, gi... - gi\|229180908\|ref\|ZP_04308243.1\| Alkaline phosphatase synthesis transcriptional regulatory protein ph... gi\|229152784, gi... - gi\|229152784\|ref\|ZP_04280967.1\| Alkaline phosphatase synthesis transcriptional regulatory protein ph... gi\|218233317, gi... - gi\|218233317\|ref\|YP_002369385.1\| DNA-binding response regulator PhoP [Bacillus cereus B4264], gi\|218... gi\|218542946, gi... - gi\|218899742\|ref\|YP_002448153.1\| DNA-binding response regulator PhoP [Bacillus cereus G9842], gi\|218... gi\|206735572, gi... - gi\|206969884\|ref\|ZP_03230838.1\| DNA-binding response regulator PhoP [Bacillus cereus AH1134], gi\|206... gi\|228836287, gi... - gi\|228923333\|ref\|ZP_04086621.1\| Alkaline phosphatase synthesis transcriptional regulatory protein ph... gi\|228910413, gi... - gi\|228910413\|ref\|ZP_04074228.1\| Alkaline phosphatase synthesis transcriptional regulatory protein ph... gi\|228903106, gi... - gi\|228903106\|ref\|ZP_04067242.1\| Alkaline phosphatase synthesis transcriptional regulatory protein ph... gi\|228792019, gi... - gi\|228967686\|ref\|ZP_04128706.1\| Alkaline phosphatase synthesis transcriptional regulatory protein ph... gi\|228960858, gi... - gi\|228960858\|ref\|ZP_04122491.1\| Alkaline phosphatase synthesis transcriptional regulatory protein ph... gi\|228804847, gi... - gi\|228954858\|ref\|ZP_04116878.1\| Alkaline phosphatase synthesis transcriptional regulatory protein ph... gi\|228941768, gi... - gi\|228941768\|ref\|ZP_04104315.1\| Alkaline phosphatase synthesis transcriptional regulatory protein ph... gi\|229072091, gi... - gi\|229072091\|ref\|ZP_04205300.1\| Alkaline phosphatase synthesis transcriptional regulatory protein ph... gi\|228723021, gi... - gi\|229048296\|ref\|ZP_04193864.1\| Alkaline phosphatase synthesis transcriptional regulatory protein ph... gi\|228778486, gi... - gi\|228981286\|ref\|ZP_04141586.1\| Alkaline phosphatase synthesis transcriptional regulatory protein ph... gi\|228785095, gi... - gi\|228974692\|ref\|ZP_04135258.1\| Alkaline phosphatase synthesis transcriptional regulatory protein ph... gi\|228636259, gi... - gi\|229147149\|ref\|ZP_04275507.1\| Alkaline phosphatase synthesis transcriptional regulatory protein ph... gi\|229129873, gi... - gi\|229129873\|ref\|ZP_04258839.1\| Alkaline phosphatase synthesis transcriptional regulatory protein ph... gi\|30022664, gi\|... - gi\|30022664\|ref\|NP_834295.1\| alkaline phosphatase synthesis transcriptional regulatory protein PhoP ... gi\|229112054, gi... - gi\|229112054\|ref\|ZP_04241597.1\| Alkaline phosphatase synthesis transcriptional regulatory protein ph... gi\|229081841, gi... - gi\|229081841\|ref\|ZP_04214333.1\| Alkaline phosphatase synthesis transcriptional regulatory protein ph...	6.0E-63	[1..239]	[1..239]
PHOP_BACSU - Alkaline phosphatase synthesis transcriptional regulatory protein phoP OS=Bacillus subtilis GN=phoP ... PHOP_BACSU - Alkaline phosphatase synthesis transcriptional regulatory protein PhoP OS=Bacillus subtilis (strain ... gi\|221324377 - gi\|221324377\|ref\|ZP_03605671.1\| two-component response regulator [Bacillus subtilis subsp. subtilis ... gi\|221320095 - gi\|221320095\|ref\|ZP_03601389.1\| two-component response regulator [Bacillus subtilis subsp. subtilis ... gi\|221315178 - gi\|221315178\|ref\|ZP_03596983.1\| two-component response regulator [Bacillus subtilis subsp. subtilis ...	7.0E-63	[1..239]	[1..240]
gi\|98660701 - gi\|98660701\|dbj\|GAA02123.1\| unnamed protein product [Pelotomaculum thermopropionicum SI]	7.0E-63	[2..236]	[104..335]
gi\|56910719, gi\|... - gi\|56964476\|ref\|YP_176207.1\| two-component response regulator of alkaline phosphatase synthesis [Bac...	7.0E-63	[1..239]	[1..240]
PHOP_BACSU - Alkaline phosphatase synthesis transcriptional regulatory protein phoP OS=Bacillus subtilis GN=phoP ... gi\|2635376, gi\|1... - gi\|2635376\|emb\|CAB14871.1\| two-component response regulator [Bacillus subtilis subsp. subtilis str. ...	7.0E-63	[1..239]	[1..240]
gi\|89154471, gi\|... - gi\|89207577\|ref\|ZP_01186115.1\| Response regulator receiver:Transcriptional regulatory protein, C-ter... gi\|229169315, gi... - gi\|229169315\|ref\|ZP_04297025.1\| Alkaline phosphatase synthesis transcriptional regulatory protein ph... gi\|228647985, gi... - gi\|229135424\|ref\|ZP_04264211.1\| Alkaline phosphatase synthesis transcriptional regulatory protein ph... gi\|228717001, gi... - gi\|229062273\|ref\|ZP_04199594.1\| Alkaline phosphatase synthesis transcriptional regulatory protein ph...	3.0E-62	[1..239]	[1..239]
gi\|190714057, gi... - gi\|191639755\|ref\|YP_001988921.1\| Putative response regulator [Lactobacillus casei BL23], gi\|19071405... gi\|116106380, gi... - gi\|116496230\|ref\|YP_807964.1\| DNA-binding response regulator [Lactobacillus casei ATCC 334], gi\|1161... gi\|239630681, gi... - gi\|239630681\|ref\|ZP_04673712.1\| DNA-binding response regulator [Lactobacillus paracasei subsp. parac...	4.0E-62	[1..238]	[1..237]

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Predicted Domain #1

Region A:
Residues: [1-239]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNRILVVDD EEFILTLIEF NLQQAGFEVI TAMDGEMALQ KATTERPDLI ILDLMLPKMD  60
   61 GMEVCKELRL QRVMTPILML TAKDDEFDKV LGLELGADDY MTKPFSPREV VARVKAILRR 120
  121 TKLQQEEQVT ETSDEESITI AELKILPEFY EAYFQGRKLE LTPKEFELLV YLAKNKSRVL 180
  181 TRDQLLSAVW NYDFAGDTRI VDVHISHLRD KIEQNTKKPT YIKTIRGLGY KLEEPKGDE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	55.522879
Match:	2oqrA
Description:	No description for 2oqrA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits