YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30264922, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	317 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30264922, gi|....

Description	E-value	Query Range	Subject Range
gi\|228636114, gi... - gi\|229147432\|ref\|ZP_04275781.1\| 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Bacillus cereus BD... gi\|229130140, gi... - gi\|229130140\|ref\|ZP_04259101.1\| 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Bacillus cereus BD... gi\|30022925, gi\|... - gi\|30022925\|ref\|NP_834556.1\| 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Bacillus cereus ATCC ... gi\|228671165, gi... - gi\|229112325\|ref\|ZP_04241864.1\| 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Bacillus cereus Ro... gi\|228722773, gi... - gi\|229048571\|ref\|ZP_04194131.1\| 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Bacillus cereus AH...	3.0E-46	[1..317]	[1..317]
gi\|152025931, gi... - gi\|89201880\|ref\|ZP_01180614.1\| 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Bacillus cereus sub...	6.0E-46	[1..317]	[1..317]
3825.m02509, 128... - /numExons=12 /strand=- /begin=98461 /end=104446 /seqFile=euttg.scaffolds.fasta /startCodon=0 /coords... gi\|89295687, gi\|... - gi\|89295687\|gb\|EAR93675.1\| 4-hydroxybenzoate polyprenyl transferase family protein [Tetrahymena ther...	4.0E-45	[17..314]	[971..1256]
gi\|47555339, gi\|... - gi\|47568036\|ref\|ZP_00238742.1\| 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Bacillus cereus G92...	3.0E-44	[1..317]	[1..317]
gi\|42784063, gi\|... - gi\|42784063\|ref\|NP_981310.1\| 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Bacillus cereus ATCC ... gi\|229141598, gi... - gi\|229141598\|ref\|ZP_04270130.1\| 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Bacillus cereus BD... gi\|217962348, gi... - gi\|217962348\|ref\|YP_002340920.1\| putative 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Bacillus...	3.0E-44	[1..317]	[1..317]
gi\|46100862, gi\|... - gi\|71023219\|ref\|XP_761839.1\| hypothetical protein UM05692.1 [Ustilago maydis 521], ref\|XP_403307.1\| ...	7.0E-44	[4..310]	[1191..1499]
gi\|228613878, gi... - gi\|229169603\|ref\|ZP_04297306.1\| 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Bacillus cereus AH... gi\|89204355, gi\|... - gi\|89204355\|ref\|ZP_01182933.1\| 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Bacillus weihenstep...	2.0E-43	[1..317]	[1..317]
gi\|68202151, gi\|... - gi\|68230245\|ref\|ZP_00569431.1\| Protoheme IX farnesyltransferase [Frankia sp. EAN1pec], gi\|68202151\|g...	3.0E-43	[11..303]	[224..505]
COQ2_DROPS - 4-hydroxybenzoate polyprenyltransferase, mitochondrial OS=Drosophila pseudoobscura pseudoobscura GN=... gi\|125775189, gi... - gi\|54638587\|gb\|EAL27989.1\| GA21912 [Drosophila pseudoobscura pseudoobscura], gi\|125775189\|ref\|XP_001...	3.0E-43	[2..317]	[62..365]
Coq2-PA - The gene Coenzyme Q biosynthesis protein 2 is referred to in FlyBase by the symbol Dmel\Coq2 (CG9613... gi\|220949886 - gi\|220949886\|gb\|ACL87486.1\| Coq2-PA [synthetic construct]	3.0E-43	[2..317]	[54..359]

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Predicted Domain #1

Region A:
Residues: [1-202]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEMNVETNSS PTAPKPSKQT GWRIWWSLLR PHTLTAAFVP VFIGTAYAMQ VGGINQIHLP  60
   61 LFLIMLLACL LIQAATNMFN EYFDYKRGLD HEGSVGIGGA IVRDGIQPKT VLNLAFGFFG 120
  121 IAILLGVYIC MNSSWWLAAI GLVCMAVAYL YTGGPLPIAY TPFGELTAGL FMGVIIIGIS 180
  181 FFIQTGTVTS EVVLLSIPSS IL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [203-317]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IGAILLANNI RDLDGDKENG RKTLAILVGR ERAVGVLASM FIVSYIWTIA LIIVGIVSPW  60
   61 MLIVFLSAPK AFKATKGFIG KSIPMEMVPA MIATAKTNTI FGLLMGIGLL LGYFL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits