YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30264977, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	288 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30264977, gi|....

Description	E-value	Query Range	Subject Range
DAPF_BACCN - Diaminopimelate epimerase OS=Bacillus cytotoxicus (strain DSM 22905 / CIP 110041 / 391-98 / NVH 391-...	2.0E-78	[1..288]	[1..288]
DAPF_BACCR - Diaminopimelate epimerase OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 / N...	2.0E-77	[1..288]	[1..288]
gi\|206970158, gi... - gi\|206970158\|ref\|ZP_03231111.1\| diaminopimelate epimerase [Bacillus cereus AH1134], gi\|206734735\|gb\|... gi\|116062043 - gi\|116062043\|dbj\|BAF34654.1\| diaminopimelate epimerase [Bacillus cereus]	2.0E-77	[1..288]	[1..288]
DAPF_BACC1 - Diaminopimelate epimerase OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=dapF PE=1 SV=1	4.0E-77	[1..288]	[1..288]
DAPF_BACWK - Diaminopimelate epimerase OS=Bacillus weihenstephanensis (strain KBAB4) GN=dapF PE=1 SV=1	6.0E-77	[1..288]	[1..288]
gi\|74493602, gi\|... - gi\|75758928\|ref\|ZP_00739039.1\| Diaminopimelate epimerase [Bacillus thuringiensis serovar israelensis... gi\|228968042, gi... - gi\|228968042\|ref\|ZP_04129049.1\| Diaminopimelate epimerase [Bacillus thuringiensis serovar sotto str.... DAPF_BACC2 - Diaminopimelate epimerase OS=Bacillus cereus (strain G9842) GN=dapF PE=1 SV=1	6.0E-77	[1..288]	[1..288]
DAPF_BACHK - Diaminopimelate epimerase OS=Bacillus thuringiensis subsp. konkukian GN=dapF PE=3 SV=1 gi\|195994315, gi... - gi\|196032886\|ref\|ZP_03100299.1\| diaminopimelate epimerase [Bacillus cereus W], gi\|195994315\|gb\|EDX58... DAPF_BACHK - Diaminopimelate epimerase OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) GN=dapF PE=1 SV=... DAPF_BACC3 - Diaminopimelate epimerase OS=Bacillus cereus (strain 03BB102) GN=dapF PE=1 SV=1 DAPF_BACC7 - Diaminopimelate epimerase OS=Bacillus cereus (strain AH187) GN=dapF PE=1 SV=1 gi\|206745346, gi... - gi\|206976422\|ref\|ZP_03237329.1\| diaminopimelate epimerase [Bacillus cereus H3081.97], gi\|206745346\|g... gi\|196043802, gi... - gi\|196043802\|ref\|ZP_03111039.1\| diaminopimelate epimerase [Bacillus cereus 03BB108], gi\|196025138\|gb...	8.0E-77	[1..288]	[1..288]
DAPF_METMP - Diaminopimelate epimerase OS=Methanococcus maripaludis GN=dapF PE=3 SV=1 DAPF_METMP - Diaminopimelate epimerase OS=Methanococcus maripaludis (strain S2 / LL) GN=dapF PE=1 SV=1	8.0E-77	[5..284]	[2..277]
DAPF_LEPIC - Diaminopimelate epimerase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhagen... DAPF_LEPIC - Diaminopimelate epimerase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhagen...	1.0E-76	[1..284]	[1..281]
DAPF_PHOPR - Diaminopimelate epimerase OS=Photobacterium profundum GN=dapF PE=1 SV=1 DAPF_PHOPR - Diaminopimelate epimerase OS=Photobacterium profundum (strain SS9) GN=dapF PE=1 SV=1	2.0E-76	[3..284]	[2..276]

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Predicted Domain #1

Region A:
Residues: [1-288]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQFSFTKMH GLGNSYIYVN MFEEQIPEED LALVAEKVSN INTGIGADGM ILICPSDVAP  60
   61 VKMRMFNNDG SEGKSCGNGL RCVAKYAYEH KLVEDTVFTI ETLAGIVTAE VTVEEGKVTL 120
  121 AKIDMGAPRL TRAEIPMLGE GETPFIRENF LYNNHRYAFT AVSMGNPHAV IFVDDVEQAP 180
  181 LTTLGPVLET HEMFPERVNV EFIEILNEEE MNFRVWERGS GVTQACGTGA CAAVVASILN 240
  241 GKMERGKEIT VHLAGGDLMI AWTEEGNVLM KGPAEVICRG VYEYKIEA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	74.154902
Match:	1gqzA
Description:	Diaminopimelate epimerase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
diaminopimelate epimerase activity	4.22926504608084	bayes_pls_golite062009
amino-acid racemase activity	3.36270508746492	bayes_pls_golite062009
racemase and epimerase activity, acting on amino acids and derivatives	3.23874676534548	bayes_pls_golite062009
catalytic activity	1.37892559560737	bayes_pls_golite062009
racemase and epimerase activity	0.0469151339756061	bayes_pls_golite062009
isomerase activity	0.0304048110491	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: