YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30259812, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	77 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30259812, gi|....

Description	E-value	Query Range	Subject Range
gi\|62129435, gi\|... - gi\|62181802\|ref\|YP_218219.1\| protein-export membrane protein [Salmonella enterica subsp. enterica se...	5.0E-16	[1..76]	[66..139]
gi\|88796600, gi\|... - gi\|88796600\|ref\|ZP_01112262.1\| protein-export membrane protein secG(General Secretory Pathway) [Alte...	3.0E-15	[1..76]	[2..75]
gi\|145565621, gi... - gi\|77816406\|ref\|ZP_00815597.1\| Preprotein translocase SecG subunit [Shewanella putrefaciens CN-32], ... gi\|120557990, gi... - gi\|82741029\|ref\|ZP_00903759.1\| Preprotein translocase SecG subunit [Shewanella sp. W3-18-1], gi\|8272...	2.0E-14	[1..76]	[1..74]
gi\|109897896, gi... - gi\|76791419\|ref\|ZP_00773925.1\| Preprotein translocase SecG subunit [Pseudoalteromonas atlantica T6c]...	2.0E-14	[2..74]	[3..73]
gi\|197334714, gi... - gi\|197334714\|ref\|YP_002155238.1\| translocase [Vibrio fischeri MJ11], gi\|197316204\|gb\|ACH65651.1\| tra... gi\|59711090, gi\|... - gi\|59711090\|ref\|YP_203866.1\| preprotein translocase subunit SecG [Vibrio fischeri ES114], gi\|5947919...	2.0E-14	[1..76]	[1..74]
gi\|254804290, gi... - gi\|254804290\|ref\|YP_003082511.1\| preprotein translocase SecG subunit [Neisseria meningitidis], gi\|25... gi\|11278861 - pir\|\|F81031 protein-export membrane protein SecG NMB1888 [imported] - Neisseria meningitidis (strain... gi\|254673861 - gi\|254673861\|emb\|CBA09641.1\| preprotein translocase SecG subunit [Neisseria meningitidis serogroup W... gi\|121051542, gi... - gi\|7379305\|emb\|CAB83860.1\| putative protein-export integral membrane protein [Neisseria meningitidis... gi\|15677723, gi\|... - gi\|7227147\|gb\|AAF42222.1\| protein-export membrane protein SecG [Neisseria meningitidis MC58], gi\|156...	2.0E-14	[3..75]	[6..78]
gi\|240122704 - gi\|240122704\|ref\|ZP_04735660.1\| preprotein translocase subunit SecG [Neisseria gonorrhoeae PID332] gi\|240120402 - gi\|240120402\|ref\|ZP_04733364.1\| preprotein translocase subunit SecG [Neisseria gonorrhoeae PID24-1] gi\|240117066 - gi\|240117066\|ref\|ZP_04731128.1\| preprotein translocase subunit SecG [Neisseria gonorrhoeae PID1] gi\|240114863 - gi\|240114863\|ref\|ZP_04728925.1\| preprotein translocase subunit SecG [Neisseria gonorrhoeae PID18] gi\|254492926, gi... - gi\|254492926\|ref\|ZP_05106097.1\| preprotein translocase subunit SecG [Neisseria gonorrhoeae 1291], gi... gi\|240124894 - gi\|240124894\|ref\|ZP_04737780.1\| preprotein translocase subunit SecG [Neisseria gonorrhoeae SK-92-679... gi\|194097611, gi... - gi\|194097611\|ref\|YP_002000647.1\| preprotein translocase subunit SecG [Neisseria gonorrhoeae NCCP1194... gi\|239998147 - gi\|239998147\|ref\|ZP_04718071.1\| preprotein translocase subunit SecG [Neisseria gonorrhoeae 35/02] gi\|240112117 - gi\|240112117\|ref\|ZP_04726607.1\| preprotein translocase subunit SecG [Neisseria gonorrhoeae MS11] gi\|59800485, gi\|... - gi\|59800485\|ref\|YP_207197.1\| preprotein translocase subunit SecG [Neisseria gonorrhoeae FA 1090], gi... gi\|240079910 - gi\|240079910\|ref\|ZP_04724453.1\| preprotein translocase subunit SecG [Neisseria gonorrhoeae FA19] gi\|240015774 - gi\|240015774\|ref\|ZP_04722314.1\| preprotein translocase subunit SecG [Neisseria gonorrhoeae FA6140] gi\|240013329 - gi\|240013329\|ref\|ZP_04720242.1\| preprotein translocase subunit SecG [Neisseria gonorrhoeae DGI18]	3.0E-14	[3..75]	[6..78]
gi\|119766595, gi... - gi\|68548330\|ref\|ZP_00587839.1\| Preprotein translocase SecG subunit [Shewanella amazonensis SB2B], gi...	4.0E-14	[1..76]	[1..74]
gi\|110807041, gi... - gi\|110807041\|ref\|YP_690561.1\| protein export - membrane protein [Shigella flexneri 5 str. 8401], gi\|...	4.0E-14	[1..76]	[26..99]
gi\|125998647, gi... - gi\|68544018\|ref\|ZP_00583697.1\| Preprotein translocase SecG subunit [Shewanella baltica OS155], gi\|68... gi\|146861898, gi... - gi\|217972312\|ref\|YP_002357063.1\| preprotein translocase subunit SecG [Shewanella baltica OS223], gi\|...	4.0E-14	[1..76]	[1..74]

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Predicted Domain #1

Region A:
Residues: [1-77]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHTLLSVLLI IVSILMIVMV LMQSSNSSGL SGAISGGAEQ LFGKQKARGI EAVLNRITIV  60
   61 LAVLFFALTI GVTYLNL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	8.69897
Match:	2akhX
Description:	Normal mode-based flexible fitted coordinates of a non-translocating SecYEG protein-conducting channel into the cryo-EM map of a SecYEG-nascent chain-70S ribosome complex from E. coli
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits