YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|11264611
Organism:	Xylella fastidiosa
Length:	259 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|11264611.

Description	E-value	Query Range	Subject Range
gi\|58426200 - gi\|58426200\|gb\|AAW75237.1\| methionine aminopeptidase [Xanthomonas oryzae pv. oryzae KACC10331]	282.0	[0..6]	[252..108]
gi\|83635961, gi\|... - gi\|83647918\|ref\|YP_436353.1\| methionine aminopeptidase, type I [Hahella chejuensis KCTC 2396], gi\|83...	282.0	[0..5]	[255..4]
gi\|77747627 - gi\|77747627\|ref\|NP_778336.2\| methionine aminopeptidase [Xylella fastidiosa Temecula1] gi\|182680649, gi... - gi\|182680649\|ref\|YP_001828809.1\| methionine aminopeptidase, type I [Xylella fastidiosa M23], gi\|1826...	279.0	[0..1]	[259..1]
gi\|21230839, gi\|... - gi\|21230839\|ref\|NP_636756.1\| methionine aminopeptidase [Xanthomonas campestris pv. campestris str. A... gi\|66769162, gi\|... - gi\|66769162\|ref\|YP_243924.1\| methionine aminopeptidase [Xanthomonas campestris pv. campestris str. 8...	279.0	[0..6]	[253..5]
gi\|170729328, gi... - gi\|170729328\|ref\|YP_001774761.1\| methionine aminopeptidase [Xylella fastidiosa M12], gi\|167964121\|gb... gi\|71275918, gi\|... - gi\|71275918\|ref\|ZP_00652201.1\| Peptidase M24A, methionine aminopeptidase, subfamily 1 [Xylella fasti... gi\|71900004, gi\|... - gi\|71900004\|ref\|ZP_00682149.1\| Peptidase M24A, methionine aminopeptidase, subfamily 1 [Xylella fasti...	278.0	[0..1]	[259..1]
gi\|88779033, gi\|... - gi\|88798257\|ref\|ZP_01113843.1\| methionine aminopeptidase, type I [Reinekea sp. MED297], gi\|88779033\|...	277.0	[0..2]	[255..1]
gi\|71730977, gi\|... - gi\|71899244\|ref\|ZP_00681406.1\| Peptidase M24A, methionine aminopeptidase, subfamily 1 [Xylella fasti...	277.0	[0..1]	[259..1]
gi\|78047041, gi\|... - gi\|78047041\|ref\|YP_363216.1\| methionine aminopeptidase [Xanthomonas campestris pv. vesicatoria str. ...	277.0	[0..6]	[252..5]

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Predicted Domain #1

Region A:
Residues: [1-259]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVAVNLKTKE EIEQMRIAGR LAATVLDVVA PYVKPGVTTA ELDQICHDYI VTVQGAIPAN  60
   61 LGYRGFPKTI CTSVNNVICH GIPSDAKVLK DGDIINIDVT VIKDGWHGDT SRMYYVGNPS 120
  121 VMARRLVETT YEAMWRGIRA VKPGATLGDI GHAIQIYAEN ERFSVVREYC GHGIGKVYHD 180
  181 NPQVLHYGRP GEGLVLESGM TFTIEPMINE GTRHHKVLPD GWTVVTKDRK LSAQWEHMIA 240
  241 VTEDGVDVLT LSPNDIGNT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	73.522879
Match:	4matA
Description:	Methionine aminopeptidase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
peptidase activity	0.71486512278733	bayes_pls_golite062009
catalytic activity	0.51899181055614	bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides	0.41611107366763	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: