YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|17740724, gi\|...
Organism:	Agrobacterium tumefaciens str. C58
Length:	210 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|17740724, gi|....

Description	E-value	Query Range	Subject Range
gi\|14023181, gi\|... - gi\|14023181\|dbj\|BAB49788.1\| mll2727 [Mesorhizobium loti MAFF303099], gi\|13472435\|ref\|NP_104002.1\| hy...	164.0	[0..9]	[209..3]
gi\|225853032, gi... - gi\|225853032\|ref\|YP_002733265.1\| NUDIX hydrolase [Brucella melitensis ATCC 23457], gi\|225641397\|gb\|A... gi\|225627994, gi... - gi\|225627994\|ref\|ZP_03786030.1\| MutT/nudix family protein [Brucella ceti str. Cudo], gi\|225617157\|gb... gi\|62290438, gi\|... - gi\|62290438\|ref\|YP_222231.1\| MutT/nudix family protein [Brucella abortus bv. 1 str. 9-941], gi\|62196... gi\|254697884 - gi\|254697884\|ref\|ZP_05159712.1\| NUDIX hydrolase [Brucella abortus bv. 2 str. 86/8/59] gi\|254694229 - gi\|254694229\|ref\|ZP_05156057.1\| NUDIX hydrolase [Brucella abortus bv. 3 str. Tulya] gi\|254689740 - gi\|254689740\|ref\|ZP_05152994.1\| NUDIX hydrolase [Brucella abortus bv. 6 str. 870] gi\|237789244, gi... - gi\|237815946\|ref\|ZP_04594943.1\| MutT/nudix family protein [Brucella abortus str. 2308 A], gi\|2377892... gi\|254710591 - gi\|254710591\|ref\|ZP_05172402.1\| NUDIX hydrolase [Brucella pinnipedialis B2/94] gi\|254708221 - gi\|254708221\|ref\|ZP_05170049.1\| NUDIX hydrolase [Brucella pinnipedialis M163/99/10] gi\|254704807 - gi\|254704807\|ref\|ZP_05166635.1\| NUDIX hydrolase [Brucella suis bv. 3 str. 686] gi\|254702275 - gi\|254702275\|ref\|ZP_05164103.1\| NUDIX hydrolase [Brucella suis bv. 5 str. 513] gi\|254730775 - gi\|254730775\|ref\|ZP_05189353.1\| NUDIX hydrolase [Brucella abortus bv. 4 str. 292] gi\|189024668, gi... - gi\|189024668\|ref\|YP_001935436.1\| MutT/nudix family protein [Brucella abortus S19], gi\|189020240\|gb\|A... gi\|254717835 - gi\|254717835\|ref\|ZP_05179646.1\| NUDIX hydrolase [Brucella ceti M13/05/1] gi\|161619497, gi... - gi\|161619497\|ref\|YP_001593384.1\| NUDIX hydrolase [Brucella canis ATCC 23365], gi\|161336308\|gb\|ABX626... gi\|254714774 - gi\|254714774\|ref\|ZP_05176585.1\| NUDIX hydrolase [Brucella ceti M644/93/1]	163.0	[0..3]	[209..1]
gi\|25526325 - pir\|\|AH3309 phosphohydrolase (mutT/nudiX family protein) BMEI0462 [imported] - Brucella melitensis (... gi\|17982372, gi\|... - gi\|17986745\|ref\|NP_539379.1\| phosphohydrolase (MUTT/NUDIX family protein) [Brucella melitensis 16M],...	163.0	[0..3]	[209..1]
gi\|45915852, gi\|... - gi\|69276884\|ref\|ZP_00612356.1\| NUDIX hydrolase [Mesorhizobium sp. BNC1], gi\|68191783\|gb\|EAN06438.1\| ...	158.0	[0..1]	[209..1]
gi\|115257887, gi... - gi\|116253239\|ref\|YP_769077.1\| putative NUDIX/MutT family protein [Rhizobium leguminosarum bv. viciae...	155.0	[0..7]	[209..10]
gi\|86358652, gi\|... - gi\|86358652\|ref\|YP_470544.1\| MutT/NUDIX family NTP pyrophosphohydrolase [Rhizobium etli CFN 42], gi\|...	155.0	[0..7]	[209..10]
gi\|15075386 - gi\|15075386\|emb\|CAC46942.1\| Nudix hydrolase [Sinorhizobium meliloti 1021] gi\|15966116 - gi\|15966116\|ref\|NP_386469.1\| hypothetical protein SMc02701 [Sinorhizobium meliloti 1021]	151.0	[0..3]	[209..1]
gi\|23502418, gi\|... - gi\|23502418\|ref\|NP_698545.1\| MutT/nudix family protein [Brucella suis 1330], gi\|23348405\|gb\|AAN30460... gi\|82700361 - gi\|82700361\|ref\|YP_414935.1\| NUDIX hydrolase [Brucella melitensis biovar Abortus 2308] gi\|82616462 - gi\|82616462\|emb\|CAJ11527.1\| NUDIX hydrolase [Brucella melitensis biovar Abortus 2308] gi\|148559044, gi... - gi\|148559044\|ref\|YP_001259428.1\| MutT/nudix family protein [Brucella ovis ATCC 25840], gi\|148370301\|...	147.0	[0..47]	[209..5]
gi\|150397473, gi... - gi\|150397473\|ref\|YP_001327940.1\| NUDIX hydrolase [Sinorhizobium medicae WSM419], gi\|150028988\|gb\|ABR...	147.0	[0..3]	[209..1]
gi\|134138261, gi... - gi\|67546778\|ref\|ZP_00424688.1\| NUDIX hydrolase [Burkholderia vietnamiensis G4], gi\|67531881\|gb\|EAM28...	142.0	[0..2]	[208..17]

Back

Predicted Domain #1

Region A:
Residues: [1-210]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTMTTLKGFT ASDFRRRVLQ EGEGVAEREN GDHVLNPGVV LSGNGIRLKD AAVLIPVIDD  60
   61 GNDARVIFTQ RTATLRQHSG QISFPGGGID AEDRTPEEAA LRETEEEIGL SRSFVETVGR 120
  121 LPDYISGTGF RIKPVLSVVR PGFDLTLNPT EVDEVFEVPL SFLMDPANHG RGSRIFQGKE 180
  181 RFFYEMPYGE RYIWGITAGI VRTIYERFYT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.30103
Match:	1nqyA
Description:	Coenzyme A pyrophosphatase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.86119802438676	bayes_pls_golite062009
hydrolase activity	0.0197788019342109	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: