YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|17935672, gi\|...
Organism:	Agrobacterium tumefaciens str. C58
Length:	106 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|17935672, gi|....

Description	E-value	Query Range	Subject Range
gi\|86281815, gi\|... - gi\|86357713\|ref\|YP_469605.1\| hypothetical protein RHE_CH02094 [Rhizobium etli CFN 42], gi\|86281815\|g...	130.0	[0..2]	[101..25]
gi\|37728038 - gi\|37728038\|gb\|AAO43499.1\| unknown [Rhizobium etli]	127.0	[0..4]	[101..1]
gi\|115256785, gi... - gi\|116252137\|ref\|YP_767975.1\| hypothetical protein RL2385 [Rhizobium leguminosarum bv. viciae 3841],...	125.0	[0..4]	[101..1]
gi\|15074586 - gi\|15074586\|emb\|CAC46231.1\| Conserved hypothetical protein [Sinorhizobium meliloti 1021] gi\|15965405 - gi\|15965405\|ref\|NP_385758.1\| hypothetical protein SMc00227 [Sinorhizobium meliloti 1021]	125.0	[0..4]	[103..1]
gi\|113872860, gi... - gi\|150396614\|ref\|YP_001327081.1\| hypothetical protein Smed_1400 [Sinorhizobium medicae WSM419], gi\|1...	122.0	[0..4]	[103..1]
gi\|46204975 - gi\|46204975\|ref\|ZP_00049218.2\| COG2938: Uncharacterized conserved protein [Magnetospirillum magnetot...	120.0	[0..4]	[99..1]
gi\|47230482 - gi\|47230482\|emb\|CAF99675.1\| unnamed protein product [Tetraodon nigroviridis]	119.0	[0..8]	[101..54]
CG12895-PA, FBpp... - This gene is referred to in FlyBase by the symbol Dmel\CG12895 (CG12895, FBgn0033523). It is a prote...	117.0	[0..8]	[101..55]
gi\|69279487, gi\|... - gi\|69279487\|ref\|ZP_00614342.1\| Protein of unknown function DUF339 [Mesorhizobium sp. BNC1], gi\|68190...	117.0	[0..4]	[91..26]

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Predicted Domain #1

Region A:
Residues: [1-106]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNAMTGLVRT SADLDPRRRR ILYRCWHRGI REMDLVLGQF AEDNIAGLSD EQLDELEIIM  60
   61 AEEDNDLVQM VTGAQPVPEK FQTPLFEKIA SYRPDFDLVT AETLKA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.522879
Match:	1x6iA
Description:	Crystal structure of ygfY from Escherichia coli
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits