YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15889011, gi\|...
Organism:	Agrobacterium tumefaciens str. C58
Length:	267 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15889011, gi|....

Description	E-value	Query Range	Subject Range
gi\|13471181, gi\|... - gi\|14021925\|dbj\|BAB48536.1\| probable sec-independent protein translocase component [Mesorhizobium lo...	269.0	[0..3]	[266..9]
gi\|27462873 - gi\|27462873\|gb\|AAO15627.1\|AF462068_4 Sec-independent translocase TatC [Rhizobium leguminosarum bv. v...	264.0	[0..1]	[264..1]
gi\|48764197 - ref\|ZP_00268749.1\| COG0805: Sec-independent protein secretion pathway component TatC [Rhodospirillum... gi\|83576020, gi\|... - gi\|83593106\|ref\|YP_426858.1\| Sec-independent protein translocase TatC [Rhodospirillum rubrum ATCC 11...	264.0	[0..2]	[255..11]
gi\|91984075, gi\|... - gi\|91984075\|gb\|ABE68898.1\| TatC [Magnetospirillum magneticum AMB-1], gi\|83311621\|ref\|YP_421885.1\| Se...	263.0	[0..1]	[267..1]
gi\|115256456, gi... - gi\|116251808\|ref\|YP_767646.1\| putative Sec-independent protein translocase protein [Rhizobium legumi...	262.0	[0..1]	[264..1]
gi\|88940623, gi\|... - gi\|88940623\|ref\|ZP_01146058.1\| Sec-independent protein translocase TatC [Acidiphilium cryptum JF-5],...	257.0	[0..3]	[261..13]
gi\|66043649, gi\|... - gi\|66043649\|ref\|YP_233490.1\| Sec-independent periplasmic protein translocase [Pseudomonas syringae p...	254.0	[0..2]	[266..4]
gi\|71558730, gi\|... - gi\|71738177\|ref\|YP_272668.1\| Sec-independent protein translocase TatC [Pseudomonas syringae pv. phas...	254.0	[0..2]	[266..4]
tr\|Q87UY5\|Q87UY5... - Sec-independent protein translocase protein TatC OS=Pseudomonas syringae pv. tomato (strain DC3000) ... gi\|28872269, gi\|... - gi\|28872269\|ref\|NP_794888.1\| sec-independent protein translocase TatC [Pseudomonas syringae pv. toma... gi\|213925788, gi... - gi\|213969417\|ref\|ZP_03397554.1\| sec-independent protein translocase TatC [Pseudomonas syringae pv. t...	252.0	[0..4]	[266..6]

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Predicted Domain #1

Region A:
Residues: [1-64]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGDTEDKPQ PLIEHLMELR TRLIWSLGAF FIAFIACFAV AKHLFNLLVI PYKWAVIWAG  60
   61 LDVA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [65-153]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KSSLIYTAPQ EFFFTQIKVA MFGAMVISFP VIASQLYKFV APGLYKNERA AFLPFLIASP  60
   61 ILFLIGAALV YFFFTPMVMW FFLAMQQLP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [154-267]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VDGEVAISLM PKVSEYLSLI MTLVLSFGLV FQLPVVTTLL ARVGILTSDW LREKRKFAIV  60
   61 MAFVVAAVLT PPDPMSQIGL ALPAIILYEI SIYMARLVER KRAAESKSTE LEET

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits