YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|25349504
Organism:	Agrobacterium tumefaciens
Length:	268 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25349504.

Description	E-value	Query Range	Subject Range
LIPB_BRUSU - Octanoyltransferase OS=Brucella suis biovar 1 (strain 1330) GN=lipB PE=3 SV=1 gi\|161620651, gi... - gi\|161620651\|ref\|YP_001594537.1\| lipoyltransferase [Brucella canis ATCC 23365], gi\|161337462\|gb\|ABX6... LIPB_BRUSU - Octanoyltransferase OS=Brucella suis GN=lipB PE=3 SV=1 gi\|254702964 - gi\|254702964\|ref\|ZP_05164792.1\| lipoyltransferase [Brucella suis bv. 3 str. 686]	263.0	[0..28]	[263..31]
LIPB_BRUAB - Octanoyltransferase OS=Brucella abortus biovar 1 (strain 9-941) GN=lipB PE=3 SV=1 gi\|254732282 - gi\|254732282\|ref\|ZP_05190860.1\| lipoyltransferase [Brucella abortus bv. 4 str. 292] LIPB_BRUA2 - Octanoyltransferase OS=Brucella abortus (strain 2308) GN=lipB PE=3 SV=1 gi\|237787915, gi... - gi\|237817102\|ref\|ZP_04596094.1\| lipoate-protein ligase B [Brucella abortus str. 2308 A], gi\|23778791... LIPB_BRUAB - Octanoyltransferase OS=Brucella abortus GN=lipB PE=3 SV=1 gi\|254698835 - gi\|254698835\|ref\|ZP_05160663.1\| lipoyltransferase [Brucella abortus bv. 2 str. 86/8/59]	262.0	[0..28]	[263..31]
LIPB_BRUME - Octanoyltransferase OS=Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) GN=lipB ... LIPB_BRUME - Octanoyltransferase OS=Brucella melitensis GN=lipB PE=3 SV=1	260.0	[0..27]	[263..27]
LIPB_CHESB - Octanoyltransferase OS=Chelativorans sp. (strain BNC1) GN=lipB PE=3 SV=1	257.0	[0..34]	[262..7]
LIPB_RHILO - Octanoyltransferase OS=Rhizobium loti GN=lipB PE=3 SV=1 LIPB_RHILO - Octanoyltransferase OS=Rhizobium loti (strain MAFF303099) GN=lipB PE=3 SV=1	255.0	[0..26]	[267..1]
LIPB_RHIME - Octanoyltransferase OS=Rhizobium meliloti GN=lipB PE=3 SV=1 LIPB_RHIME - Octanoyltransferase OS=Rhizobium meliloti (strain 1021) GN=lipB PE=3 SV=1	253.0	[0..27]	[263..14]
LIPB_SINMW - Octanoyltransferase OS=Sinorhizobium medicae (strain WSM419) GN=lipB PE=3 SV=1	252.0	[0..26]	[264..13]
gi\|159184811, gi... - gi\|17935454\|ref\|NP_532244.1\| lipoyltransferase [Agrobacterium tumefaciens str. C58], gi\|17739983\|gb\|... gi\|25349503 - pir\|\|AB2768 lipoate biosynthesis protein B [imported] - Agrobacterium tumefaciens (strain C58, Dupon...	252.0	[0..36]	[268..1]
gi\|114539685, gi... - gi\|114704900\|ref\|ZP_01437808.1\| lipoyltransferase [Fulvimarina pelagi HTCC2506], gi\|114539685\|gb\|EAU...	247.0	[0..32]	[258..19]
gi\|90419573, gi\|... - gi\|90419573\|ref\|ZP_01227483.1\| lipoate-protein ligase B [Aurantimonas sp. SI85-9A1], gi\|90336510\|gb\|... gi\|90419573, gi\|... - gi\|90419573\|ref\|ZP_01227483.1\| lipoate-protein ligase B [Aurantimonas sp. SI85-9A1], gi\|90336510\|gb\|...	245.0	[0..35]	[258..20]

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Predicted Domain #1

Region A:
Residues: [1-268]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQEARKCWGC GLVAILREGC GKDFFMLTRT DIETNMFPAA GSPPVRWRIS EGLVAYGQAV  60
   61 EEMEREVAAI AAGEADELVW LLEHPPLYTA GTSADVADLI EPDRFPVFAT GRGGEYTYHG 120
  121 PGQRVVYVML DLKRRRQDVR AYVAALEDVI IRTLDKMNVR GERREDRVGV WVRRPEKPLL 180
  181 PDGGMAEDKI AALGIRLRKW VSFHGLSINV DPDLSHFSGI VPCGISAYGV TSLVDLGLPV 240
  241 MIGDVDVLLR EAFEEVFGPA VPETGAGG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	48.221849
Match:	1w66A
Description:	Title withheld
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
ligase activity, forming carbon-oxygen bonds	3.33073922220594	bayes_pls_golite062009
ligase activity, forming aminoacyl-tRNA and related compounds	3.33073922220594	bayes_pls_golite062009
aminoacyl-tRNA ligase activity	3.33034630936933	bayes_pls_golite062009
ligase activity	3.05852492533937	bayes_pls_golite062009
catalytic activity	2.36416267096403	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: