YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|25290024, gi\|...
Organism:	Agrobacterium tumefaciens
Length:	248 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25290024, gi|....

Description	E-value	Query Range	Subject Range
gi\|115255924, gi... - gi\|116251276\|ref\|YP_767114.1\| putative signal peptidase [Rhizobium leguminosarum bv. viciae 3841], g...	266.0	[0..1]	[247..1]
gi\|86281129, gi\|... - gi\|86357027\|ref\|YP_468919.1\| signal peptidase I protein [Rhizobium etli CFN 42], gi\|86281129\|gb\|ABC9...	265.0	[0..1]	[247..1]
gi\|15964824 - gi\|15964824\|ref\|NP_385177.1\| signal peptidase I transmembrane protein [Sinorhizobium meliloti 1021] gi\|15074003 - gi\|15074003\|emb\|CAC45650.1\| Probable signal peptidase I transmembrane protein [Sinorhizobium melilot...	262.0	[0..1]	[247..1]
gi\|150027420, gi... - gi\|150395905\|ref\|YP_001326372.1\| signal peptidase I [Sinorhizobium medicae WSM419], gi\|150027420\|gb\|...	261.0	[0..1]	[247..1]
gi\|237815115, gi... - gi\|237815115\|ref\|ZP_04594113.1\| signal peptidase I [Brucella abortus str. 2308 A], gi\|237789952\|gb\|E... gi\|17983276, gi\|... - gi\|17987571\|ref\|NP_540205.1\| signal peptidase I [Brucella melitensis 16M], gi\|17983276\|gb\|AAL52469.1... gi\|25290026 - pir\|\|AB3413 signal peptidase I (EC 3.4.21.89) [imported] - Brucella melitensis (strain 16M)	257.0	[0..2]	[247..23]
gi\|254729967 - gi\|254729967\|ref\|ZP_05188545.1\| signal peptidase I [Brucella abortus bv. 4 str. 292] gi\|254717155 - gi\|254717155\|ref\|ZP_05178966.1\| signal peptidase I [Brucella ceti M13/05/1] gi\|254718801 - gi\|254718801\|ref\|ZP_05180612.1\| signal peptidase I [Brucella sp. 83/13] gi\|23501547, gi\|... - gi\|23501547\|ref\|NP_697674.1\| signal peptidase I [Brucella suis 1330], gi\|23347458\|gb\|AAN29589.1\| sig... gi\|82699548 - gi\|82699548\|ref\|YP_414122.1\| signal peptidase S26A:Signal peptidase [Brucella melitensis biovar Abor... gi\|254693418 - gi\|254693418\|ref\|ZP_05155246.1\| signal peptidase I [Brucella abortus bv. 3 str. Tulya] gi\|62195752, gi\|... - gi\|62289620\|ref\|YP_221413.1\| signal peptidase I [Brucella abortus bv. 1 str. 9-941], gi\|62195752\|gb\|... gi\|254697071 - gi\|254697071\|ref\|ZP_05158899.1\| signal peptidase I [Brucella abortus bv. 2 str. 86/8/59] gi\|82615649 - gi\|82615649\|emb\|CAJ10636.1\| Bacterial signal peptidase S26A:Signal peptidase [Brucella melitensis bi... gi\|225640546, gi... - gi\|225852181\|ref\|YP_002732414.1\| signal peptidase I [Brucella melitensis ATCC 23457], gi\|225640546\|g... gi\|254688936 - gi\|254688936\|ref\|ZP_05152190.1\| signal peptidase I [Brucella abortus bv. 6 str. 870] gi\|148559685, gi... - gi\|148559685\|ref\|YP_001258644.1\| signal peptidase I [Brucella ovis ATCC 25840], gi\|148370942\|gb\|ABQ6... gi\|254709786 - gi\|254709786\|ref\|ZP_05171597.1\| signal peptidase I [Brucella pinnipedialis B2/94] gi\|161335441, gi... - gi\|161618630\|ref\|YP_001592517.1\| signal peptidase I [Brucella canis ATCC 23365], gi\|161335441\|gb\|ABX... gi\|254713788 - gi\|254713788\|ref\|ZP_05175599.1\| signal peptidase I [Brucella ceti M644/93/1] gi\|189023874, gi... - gi\|189023874\|ref\|YP_001934642.1\| Bacterial signal peptidase S26A [Brucella abortus S19], gi\|18901944... gi\|254701448 - gi\|254701448\|ref\|ZP_05163276.1\| signal peptidase I [Brucella suis bv. 5 str. 513] gi\|254707632 - gi\|254707632\|ref\|ZP_05169460.1\| signal peptidase I [Brucella pinnipedialis M163/99/10]	255.0	[0..2]	[247..5]
gi\|68189943, gi\|... - gi\|69279687\|ref\|ZP_00614493.1\| Signal peptidase I [Mesorhizobium sp. BNC1], gi\|68189943\|gb\|EAN04605....	255.0	[0..2]	[247..4]
gi\|90420861, gi\|... - gi\|90420861\|ref\|ZP_01228766.1\| signal peptidase I [Aurantimonas sp. SI85-9A1], gi\|90334836\|gb\|EAS486... gi\|90420861, gi\|... - gi\|90420861\|ref\|ZP_01228766.1\| signal peptidase I [Aurantimonas sp. SI85-9A1], gi\|90334836\|gb\|EAS486...	248.0	[0..1]	[248..1]
gi\|114538120, gi... - gi\|114706259\|ref\|ZP_01439161.1\| Bacterial signal peptidase S26A:Signal peptidase [Fulvimarina pelagi...	248.0	[0..3]	[248..48]
gi\|14027202, gi\|... - gi\|14027202\|dbj\|BAB54156.1\| signal peptidase I [Mesorhizobium loti MAFF303099], gi\|13476441\|ref\|NP_1...	247.0	[0..2]	[247..4]

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Predicted Domain #1

Region A:
Residues: [1-248]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEKAEKKQN ALWENVKVII QALLLAMVIR TVLFQPFTIP SGSMMPTLLV GDYLFVNKFS  60
   61 YGYSKYSLPF SPNLFSGRIL EFSKPKRGDV VVFRLPPNPE VDYIKRLVGL PGDRVQVTNG 120
  121 VLFINGQPVP KQPDGTFTSD YRADPGTNVP VFRETLDNGV TYDTLDQSPD SRGDNTREFV 180
  181 VPEGHYFMMG DNRDNSLDSR FDVGFVPEEN LIGRASVIFF SLGNDTPFSR IWEWPANMRW 240
  241 DRLFKVVG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	50.0
Match:	1t7dA
Description:	Crystal structure of Escherichia coli type I signal peptidase in complex with a lipopeptide inhibitor
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
peptidase activity	0.485843348899278	bayes_pls_golite062009
catalytic activity	0.415601732277814	bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides	0.237734983138449	bayes_pls_golite062009
hydrolase activity	0.188292586303013	bayes_pls_golite062009
protein binding	0.0579980138351139	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: