YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15155496, gi\|...
Organism:	Agrobacterium tumefaciens str. C58
Length:	244 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15155496, gi|....

Description	E-value	Query Range	Subject Range
gi\|4982109, gi\|1... - gi\|4982109\|gb\|AAD36609.1\|AE001800_19 flagellar basal-body rod protein FlgG [Thermotoga maritima MSB8... gi\|7443089 - pir\|\|B72243 flagellar basal-body rod protein FlgG - Thermotoga maritima (strain MSB8) gi\|119886237, gi... - gi\|148270380\|ref\|YP_001244840.1\| flagellar basal-body rod protein FlgG [Thermotoga petrophila RKU-1]...	223.0	[0..1]	[241..1]
gi\|7443088 - pir\|\|C70372 flagellar hook basal body protein flgG - Aquifex aeolicus gi\|15606190, gi\|... - gi\|2983377\|gb\|AAC06963.1\| flagellar hook basal-body protein FlgG [Aquifex aeolicus VF5], gi\|15606190...	222.0	[0..1]	[241..1]
gi\|114566479, gi... - gi\|114566479\|ref\|YP_753633.1\| flagellar basal-body rod protein FlgG [Syntrophomonas wolfei subsp. wo...	222.0	[0..1]	[241..1]
gi\|94731432, gi\|... - gi\|94987183\|ref\|YP_595116.1\| flagellar basal body rod protein FlgG [Lawsonia intracellularis PHE/MN1...	222.0	[0..1]	[242..1]
gi\|58582198, gi\|... - gi\|58582198\|ref\|YP_201214.1\| flagellar biosynthesis cell-distal portion of basal-body rod [Xanthomon...	221.0	[0..1]	[238..81]
gi\|189018758, gi... - gi\|189026183\|ref\|YP_001933955.1\| flagellar basal-body rod protein [Treponema pallidum subsp. pallidu... gi\|15639944, gi\|... - gi\|3323281\|gb\|AAC65915.1\| flagellar basal-body rod protein (flgG-1) [Treponema pallidum subsp. palli... gi\|7443084 - pir\|\|C71259 probable flagellar basal-body rod protein (flgG-1) - syphilis spirochete	221.0	[0..1]	[241..1]
gi\|67677244, gi\|... - gi\|92114096\|ref\|YP_574024.1\| flagellar basal-body rod FlgG [Chromohalobacter salexigens DSM 3043], g...	219.0	[0..1]	[239..1]
gi\|46448340, gi\|... - gi\|46578928\|ref\|YP_009736.1\| flagellar basal body rod protein FlgG [Desulfovibrio vulgaris subsp. vu... gi\|241909539, gi... - gi\|241909539\|ref\|ZP_04794070.1\| flagellar basal-body rod protein FlgG [Desulfovibrio vulgaris RCH1],... gi\|120603471, gi... - gi\|120603471\|ref\|YP_967871.1\| flagellar basal body rod protein FlgG [Desulfovibrio vulgaris subsp. v...	218.0	[0..1]	[241..1]
gi\|146295641, gi... - gi\|82501402\|ref\|ZP_00886737.1\| Flagellar basal body and hook proteins [Caldicellulosiruptor saccharo...	216.0	[0..1]	[241..1]
gi\|89211345, gi\|... - gi\|89211345\|ref\|ZP_01189714.1\| Protein of unknown function DUF1078 [Halothermothrix orenii H 168], g...	215.0	[0..1]	[241..1]

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Predicted Domain #1

Region A:
Residues: [1-69]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQSGLYVALS SQIALERRLT TISDNMANVN TVGFRGSEVK FDEMVAKNHN DMNAKVAFVS  60
   61 QGNDYLSTR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.524	0.058	bacterial-type flagellum	d.1.1	Microbial ribonucleases
View	Download	0.628	0.041	bacterial-type flagellum	f.14.1	Voltage-gated potassium channels
View	Download	0.576	0.027	bacterial-type flagellum	a.36.1	Signal peptide-binding domain
View	Download	0.548	0.015	bacterial-type flagellum	d.150.1	4'-phosphopantetheinyl transferase
View	Download	0.489	N/A	N/A	a.8.2	Plasmid maintenance system epsilon/zeta, antidote epsilon subunit

Predicted Domain #2

Region A:
Residues: [70-244]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QGAFEQTGNS FDFAIKGDAW FALDTPDGQI LTRDGRFTMR PDGALISSSG YPVLDAGGGP  60
   61 IRLNPNGGPI TVGLDGAIRQ NDTIAASLGI FQADFSKGFL RHPNSGVKPV AQPVPVVNNH 120
  121 EVGVVQGYLE QSNVNGISQM TQLIQVNRAF ESISSMMRDT ESTFGEGIKT LGGAR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	7.045757
Match:	1wlgA
Description:	Crystal structure of FlgE31, a major fragment of the hook protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits