YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15155111, gi\|...
Organism:	Agrobacterium tumefaciens str. C58
Length:	268 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15155111, gi|....

Description	E-value	Query Range	Subject Range
gi\|15073068 - gi\|15073068\|emb\|CAC41527.1\| Putative pilus assembly signal peptide protein [Sinorhizobium meliloti 1... gi\|15963893 - gi\|15963893\|ref\|NP_384246.1\| putative pilus assembly signal peptide protein [Sinorhizobium meliloti ...	239.0	[0..1]	[268..1]
gi\|150398540, gi... - gi\|150398540\|ref\|YP_001329007.1\| SAF domain-containing protein [Sinorhizobium medicae WSM419], gi\|15...	235.0	[0..1]	[268..1]
gi\|14025414, gi\|... - gi\|14025414\|dbj\|BAB52014.1\| pilus assembly protein; CpaB [Mesorhizobium loti MAFF303099], gi\|1347465...	223.0	[0..1]	[263..1]
gi\|45915136, gi\|... - gi\|69278612\|ref\|ZP_00613718.1\| Flp pilus assembly CpaB [Mesorhizobium sp. BNC1], gi\|68190841\|gb\|EAN0...	218.0	[0..1]	[264..1]
gi\|27376551, gi\|... - gi\|27376551\|ref\|NP_768080.1\| pilus assembly protein [Bradyrhizobium japonicum USDA 110], gi\|27349692...	207.0	[0..1]	[265..4]
gi\|115520238, gi... - gi\|77741708\|ref\|ZP_00810190.1\| Flp pilus assembly CpaB [Rhodopseudomonas palustris BisA53], gi\|77698...	202.0	[0..1]	[236..1]
gi\|91798908, gi\|... - gi\|92116014\|ref\|YP_575743.1\| Flp pilus assembly CpaB [Nitrobacter hamburgensis X14], gi\|91798908\|gb\|...	200.0	[0..1]	[262..1]
gi\|74419370, gi\|... - gi\|75674500\|ref\|YP_316921.1\| Flp pilus assembly CpaB [Nitrobacter winogradskyi Nb-255], gi\|74419370\|...	196.0	[0..1]	[262..16]
gi\|85699408, gi\|... - gi\|85713504\|ref\|ZP_01044494.1\| Flp pilus assembly CpaB [Nitrobacter sp. Nb-311A], gi\|85699408\|gb\|EAQ...	196.0	[0..1]	[262..1]

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Predicted Domain #1

Region A:
Residues: [1-136]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPSRIVILS VALVAAGLAG LVAMQISGAK QVIEKAETII QKEPTVNVLI SSVNLPVGSR  60
   61 LNDSSMRWTP WPQGNVVDSF ITQAKRPDAI TELAGTVVRL PLFEGEPIRP EKVVDSSTRI 120
  121 MSSLLPAGKR AVATEI

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.65
Match:	1wvoA
Description:	Solution structure of RSGI RUH-029, an antifreeze protein like domain in human N-acetylneuraminic acid phosphate synthase gene.
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [137-268]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SVSTGAGGFV LPNDRVDVIM VRKGENGNFL TENVLNNVRV LAIDQQIKEG EDGIAAVVGA  60
   61 TATLELTPEQ AKIITVAQQM ADRLTLALRS VADAQENDTL SAGHLLSGSS GQPEIQVIKS 120
  121 GSIVKSGQGA SQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits