YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15155016, gi\|...
Organism:	Agrobacterium tumefaciens str. C58
Length:	291 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15155016, gi|....

Description	E-value	Query Range	Subject Range
gi\|25349730 - pir\|\|AD2593 surfeit 1 [imported] - Agrobacterium tumefaciens (strain C58, Dupont) gi\|159184176, gi... - gi\|17934056\|ref\|NP_530846.1\| surfeit 1 [Agrobacterium tumefaciens str. C58], gi\|17738460\|gb\|AAL41162...	305.0	[0..16]	[291..1]
gi\|33086478 - gi\|33086478\|gb\|AAP92551.1\| Ab1-205 [Rattus norvegicus]	274.0	[0..9]	[281..454]
gi\|74185840 - gi\|74185840\|dbj\|BAE32790.1\| unnamed protein product [Mus musculus]	263.0	[0..10]	[275..28]
gi\|254712344 - gi\|254712344\|ref\|ZP_05174155.1\| SurF1 family protein [Brucella ceti M644/93/1] gi\|254715416 - gi\|254715416\|ref\|ZP_05177227.1\| SurF1 family protein [Brucella ceti M13/05/1] gi\|254699774 - gi\|254699774\|ref\|ZP_05161602.1\| SurF1 family protein [Brucella suis bv. 5 str. 513] gi\|254702907 - gi\|254702907\|ref\|ZP_05164735.1\| SurF1 family protein [Brucella suis bv. 3 str. 686] gi\|23463883, gi\|... - gi\|23500275\|ref\|NP_699715.1\| SurF1 family protein [Brucella suis 1330], gi\|23463883\|gb\|AAN33720.1\| S... gi\|161337401, gi... - gi\|161620590\|ref\|YP_001594476.1\| Surfeit locus protein 1 [Brucella canis ATCC 23365], gi\|161337401\|g...	254.0	[0..46]	[283..13]
gi\|42549191, gi\|... - gi\|46129350\|ref\|XP_389036.1\| hypothetical protein FG08860.1 [Gibberella zeae PH-1], gi\|42549191\|gb\|E...	254.0	[0..13]	[290..28]

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Predicted Domain #1

Region A:
Residues: [1-192]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPGAIYGVI CWRKRMRAER GPPKQTISLP VALRKDRDMS EIAPQNRRIR PAAIVVLFLT  60
   61 IALTGCLLAL GTWQVQRLFW KLDLIERVDV RAHAEPVDAP AASDWPALGN PSDYEYRRVK 120
  121 LTGTLLNDRE VQVYTVTDLG PGYWVMTPLR RDDGSSIIVN RGFVPSDRRD PSSRTGGEPT 180
  181 GNVEIVGLMR AP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [193-291]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ETGGLFLRTN DPANGRWYSR NIPQITQASG LSDVAPFYVD ADATPNPGGL PVGGKTMLTF  60
   61 PNNHLSYAVT WYILAAMVVA AGWYVLRNLN APKSKRDAD

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits