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View Structure Prediction Details

Protein: GAMT2_ARATH
Organism: Arabidopsis thaliana
Length: 387 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GAMT2_ARATH.

Description E-value Query
Range
Subject
Range
gi|10177828 - gi|10177828|dbj|BAB11257.1| S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like p...
495.0 [0..8] [387..1]

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Predicted Domain #1
Region A:
Residues: [1-387]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESPSLPMTA KDWTTTSLHR VFAMQGGEDD LSYVNNSDSQ ALAITLSKPI LISSLQSIKL  60
   61 FSDQTPIKIT DLGCATGSNT FTTVDTVVET LQRRYTARCG GGGSPEFEAF FCDLPSNDFN 120
  121 MLFKLLAEKQ KVDSPAKYFA GGVAGSFYDR LFPRGTIHVA VSLSALHWLS QIPEKVLEKE 180
  181 SRTWNKGKTW IEGAKKEVVE AYAEQSDKDL DDFMSCRKEE MVKGGVLFVL MAGRPSGSSS 240
  241 QFGDQDTRAK HPFTTTMEQA WQDLIEEGLI DEETRDGFNI PAYMRSPEEV TAGIDRCGGF 300
  301 KIGKMDFLKI VEYSDEKQEE WKKDPVSYGR ARTNLVQAAI RPMVDAYLGP DLSHELFKRY 360
  361 ENRVSTNQEF LHITCFYGVV VFSAIRV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 135.0
Match: 1m6eX
Description: CRYSTAL STRUCTURE OF SALICYLIC ACID CARBOXYL METHYLTRANSFERASE (SAMT)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.723277178398499 bayes_pls_golite062009
transferase activity 0.64512166557639 bayes_pls_golite062009
transferase activity, transferring one-carbon groups 0.54403439349476 bayes_pls_golite062009
methyltransferase activity 0.54389223881989 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle