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View Structure Prediction Details

Protein: ERCC2_ARATH
Organism: Arabidopsis thaliana
Length: 758 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ERCC2_ARATH.

Description E-value Query
Range
Subject
Range
Xpd-PA - The gene Xeroderma pigmentosum D is referred to in FlyBase by the symbol Dmel\Xpd (CG9433, FBgn00158...
625.0 [0..1] [757..1]

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Predicted Domain #1
Region A:
Residues: [1-423]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIFKIEDVTV YFPYDNIYPE QYEYMVELKR ALDAKGHCLL EMPTGTGKTI ALLSLITSYR  60
   61 LSRPDSPIKL VYCTRTVHEM EKTLGELKLL HDYQVRHLGT QAKILALGLS SRKNLCVNTK 120
  121 VLAAENRDSV DAACRKRTAS WVRALSTENP NVELCDFFEN YEKAAENALL PPGVYTLEDL 180
  181 RAFGKNRGWC PYFLARHMIQ FANVIVYSYQ YLLDPKVAGF ISKELQKESV VVFDEAHNID 240
  241 NVCIEALSVS VRRVTLEGAN RNLNKIRQEI DRFKATDAGR LRAEYNRLVE GLALRGDLSG 300
  301 GDQWLANPAL PHDILKEAVP GNIRRAEHFV HVLRRLLQYL GVRLDTENVE KESPVSFVSS 360
  361 LNSQAGIEQK TLKFCYDRLQ SLMLTLEITD TDEFLPIQTV CDFATLVGTY ARGFSIIIEP 420
  421 YDE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 12.30103
Match: 2i4iA
Description: No description for 2i4iA was found.

Predicted Domain #2
Region A:
Residues: [424-758]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RMPHIPDPIL QLSCHDASLA IKPVFDRFQS VVITSGTLSP IDLYPRLLNF TPVVSRSFKM  60
   61 SMTRDCICPM VLTRGSDQLP VSTKFDMRSD PGVVRNYGKL LVEMVSIVPD GVVCFFVSYS 120
  121 YMDGIIATWN ETGILKEIMQ QKLVFIETQD VVETTLALDN YRRACDCGRG AVFFSVARGK 180
  181 VAEGIDFDRH YGRLVVMYGV PFQYTLSKIL RARLEYLHDT FQIKEGDFLT FDALRQAAQC 240
  241 VGRVIRSKAD YGMMIFADKR YSRHDKRSKL PGWILSHLRD AHLNLSTDMA IHIAREFLRK 300
  301 MAQPYDKAGT MGRKTLLTQE DLEKMAETGV QDMAY

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 0.984
Match: 2ocaA
Description: No description for 2ocaA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle