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View Structure Prediction Details

Protein: XPOT_ARATH
Organism: Arabidopsis thaliana
Length: 988 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for XPOT_ARATH.

Predicted Domain #1
Region A:
Residues: [1-916]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDDLEQAIVI SFETGAVDSA LKSQAVTYCQ QIKETPSICS ICIEKLWFSK LVQVQFWCLQ  60
   61 TLQDVLRVKY GSMSLDEQSY VRKSVFSMAC LEVIDNENAG RVVEGPPFVK NKLAQVLATL 120
  121 IYYEYPLIWS SVFLDFMLHL CKGAVVIDMF CRVLNALDDE LISLDYPRTP EEISVAARVK 180
  181 DAMRQQCVPQ IARAWYDIVS MYKNSDPDLS ATVLDCMRRF VSWIDIGLVA NDAFVPLLFE 240
  241 LILSDGLSEQ VRGAAAGCVL AMVSKRMDPQ SKLPLLQTLQ ISRVFGLVSG DVDSDLVSKV 300
  301 SALLTGYAVE VLECHKRLNS EDTKAVSMDL LNEVLPSVFY VMQKCEVDST FSIVQFLLGY 360
  361 VSTLKGLPAL KEKQLLHITQ ILEVIRIQIC YDPMYRNNLN SLDKTGLEEE DRMSEFRKDL 420
  421 FVLLRTVGRV APEVTQHFIR NSLANAVESS SESNVEEVEA ALSLLYSFGE SMTEEAMKTG 480
  481 SGCLSELIPM LLTTQFPGHS HRLVALVYLE NITRYMKFIQ ENSQYIPNVL GAFLDDRGLH 540
  541 HQNFYVSRRA GYLFMRVVKL LKSKLVPFID KILQNLQDTL SQLTTMNFAS RELTGTEDGS 600
  601 HIFEAIGIII GLEDVPAEKQ SDYLSLLLTP LCQQIEAGLV QAKVASSEDF PVKIANIQFA 660
  661 IVAINALSKG FNERLVTASR PGIGLMFKQT LDVLLRVLIE FPKVEPLRSK VTSFIHRMVD 720
  721 TLGSAVFPYL PKALEQLLAD SEPKEMVGFM VLLNQLICKF NSALHDILEE VYPVVAVRIF 780
  781 NVIPRDGLPS RPGAVTEEMR ELIELQRMLY TFLHVIATHD LSSVFLTPKS RAYLDPMMQL 840
  841 VLNTSCNHKD ITVRKACVQI FIKLIKDWCA EPYSEEKVPG FQNFVIEAFA TNCCLYSVLD 900
  901 KSFNFSDANT HALFGE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 92.154902
Match: 1qbkB
Description: Karyopherin beta2
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [917-988]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IITAQKVMYE KFGNTFLMHL MSKSFPSAHI PQDLAEQYCQ KLQGNDIRSL KSYYQSLIEN  60
   61 LRLQQNGSHV FR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 29.522879
Match: 1w9cA
Description: Proteolytic fragment of CRM1 spanning six C-terminal HEAT repeats
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle