YRC Public Data Repository - Protein Structure Prediction

Protein:	RNJ_HELPY
Organism:	Helicobacter pylori 26695
Length:	689 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RNJ_HELPY.

Description	E-value	Query Range	Subject Range
gi\|108563780, gi... - gi\|108563780\|ref\|YP_628096.1\| ATP/GTP binding protein [Helicobacter pylori HPAG1], gi\|107837553\|gb\|A...	565.0	[0..1]	[689..1]
gi\|89206418, gi\|... - gi\|89206418\|ref\|ZP_01184977.1\| Conserved hypothetical protein MG423 [Bacillus weihenstephanensis KBA... gi\|229013183, gi... - gi\|229013183\|ref\|ZP_04170327.1\| Ribonuclease J 1 [Bacillus mycoides DSM 2048], gi\|228748133\|gb\|EEL97... gi\|229134786, gi... - gi\|229134786\|ref\|ZP_04263594.1\| Ribonuclease J 1 [Bacillus cereus BDRD-ST196], gi\|228648639\|gb\|EEL04... gi\|228717651, gi... - gi\|229061644\|ref\|ZP_04198983.1\| Ribonuclease J 1 [Bacillus cereus AH603], gi\|228717651\|gb\|EEL69307.1...	558.0	[0..133]	[688..1]
gi\|118418413, gi... - gi\|118479188\|ref\|YP_896339.1\| metallo-beta-lactamase superfamily hydrolase [Bacillus thuringiensis s... gi\|254758068 - gi\|254758068\|ref\|ZP_05210095.1\| RNA-metabolising metallo-beta-lactamase family protein [Bacillus ant... gi\|254754241 - gi\|254754241\|ref\|ZP_05206276.1\| RNA-metabolising metallo-beta-lactamase family protein [Bacillus ant... gi\|254743980 - gi\|254743980\|ref\|ZP_05201663.1\| RNA-metabolising metallo-beta-lactamase family protein [Bacillus ant... gi\|254736089 - gi\|254736089\|ref\|ZP_05193795.1\| RNA-metabolising metallo-beta-lactamase family protein [Bacillus ant... gi\|254721579 - gi\|254721579\|ref\|ZP_05183368.1\| RNA-metabolising metallo-beta-lactamase family protein [Bacillus ant... gi\|254683744 - gi\|254683744\|ref\|ZP_05147604.1\| RNA-metabolising metallo-beta-lactamase family protein [Bacillus ant... gi\|229266391, gi... - gi\|229601983\|ref\|YP_002868277.1\| RNA-metabolising metallo-beta-lactamase family protein [Bacillus an... gi\|228585392, gi... - gi\|229198094\|ref\|ZP_04324805.1\| Ribonuclease J 1 [Bacillus cereus m1293], gi\|228585392\|gb\|EEK43499.1... gi\|228597393, gi... - gi\|229186217\|ref\|ZP_04313386.1\| Ribonuclease J 1 [Bacillus cereus BGSC 6E1], gi\|228597393\|gb\|EEK5504... gi\|229157555, gi... - gi\|229157555\|ref\|ZP_04285632.1\| Ribonuclease J 1 [Bacillus cereus ATCC 4342], gi\|228626005\|gb\|EEK827... gi\|229140707, gi... - gi\|229140707\|ref\|ZP_04269255.1\| Ribonuclease J 1 [Bacillus cereus BDRD-ST26], gi\|228642779\|gb\|EEK990... gi\|228659985, gi... - gi\|229123498\|ref\|ZP_04252697.1\| Ribonuclease J 1 [Bacillus cereus 95/8201], gi\|228659985\|gb\|EEL15626... gi\|229093026, gi... - gi\|229093026\|ref\|ZP_04224157.1\| Ribonuclease J 1 [Bacillus cereus Rock3-42], gi\|228690397\|gb\|EEL4418... gi\|228987162, gi... - gi\|228987162\|ref\|ZP_04147285.1\| Ribonuclease J 1 [Bacillus thuringiensis serovar tochigiensis BGSC 4... gi\|164711360, gi... - gi\|165872873\|ref\|ZP_02217498.1\| RNA-metabolising metallo-beta-lactamase family protein [Bacillus ant... gi\|228812216, gi... - gi\|228947696\|ref\|ZP_04109986.1\| Ribonuclease J 1 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1... gi\|167633673, gi... - gi\|167633673\|ref\|ZP_02391997.1\| RNA-metabolising metallo-beta-lactamase family protein [Bacillus ant... gi\|228935292, gi... - gi\|228935292\|ref\|ZP_04098118.1\| Ribonuclease J 1 [Bacillus thuringiensis serovar andalousiensis BGSC... gi\|167512471, gi... - gi\|167639412\|ref\|ZP_02397683.1\| RNA-metabolising metallo-beta-lactamase family protein [Bacillus ant... gi\|228830831, gi... - gi\|228929024\|ref\|ZP_04092056.1\| Ribonuclease J 1 [Bacillus thuringiensis serovar pondicheriensis BGS... gi\|170687269, gi... - gi\|170687269\|ref\|ZP_02878487.1\| RNA-metabolising metallo-beta-lactamase family protein [Bacillus ant... gi\|228843193, gi... - gi\|228916614\|ref\|ZP_04080180.1\| Ribonuclease J 1 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC... gi\|170129295, gi... - gi\|170705755\|ref\|ZP_02896218.1\| RNA-metabolising metallo-beta-lactamase family protein [Bacillus ant... gi\|227816751, gi... - gi\|227816751\|ref\|YP_002816760.1\| RNA-metabolising metallo-beta-lactamase family protein [Bacillus an... gi\|225865959, gi... - gi\|225865959\|ref\|YP_002751337.1\| RNA-metabolising metallo-beta-lactamase family protein [Bacillus ce... gi\|221241484, gi... - gi\|222097426\|ref\|YP_002531483.1\| hydrolase, metallo-beta-lactamase superfamily [Bacillus cereus Q1],... gi\|47565853, gi\|... - gi\|47565853\|ref\|ZP_00236892.1\| metallo-beta-lactamase superfamily protein [Bacillus cereus G9241], g... gi\|177655199, gi... - gi\|177655199\|ref\|ZP_02936808.1\| RNA-metabolising metallo-beta-lactamase family protein [Bacillus ant... gi\|190562943, gi... - gi\|190566024\|ref\|ZP_03018943.1\| RNA-metabolising metallo-beta-lactamase family protein [Bacillus ant... gi\|49330038, gi\|... - gi\|49478482\|ref\|YP_038038.1\| metallo-beta-lactamase superfamily hydrolase [Bacillus thuringiensis se... gi\|196035791, gi... - gi\|196035791\|ref\|ZP_03103193.1\| RNA-metabolising metallo-beta-lactamase family protein [Bacillus cer... gi\|52141514, gi\|... - gi\|52141514\|ref\|YP_085316.1\| metallo-beta-lactamase superfamily hydrolase [Bacillus cereus E33L], gi... gi\|196030592, gi... - gi\|196038869\|ref\|ZP_03106177.1\| RNA-metabolising metallo-beta-lactamase family protein [Bacillus cer... gi\|47504633, gi\|... - gi\|47529485\|ref\|YP_020834.1\| hypothetical protein GBAA4190 [Bacillus anthracis str. 'Ames Ancestor']... gi\|196023363, gi... - gi\|196045923\|ref\|ZP_03113152.1\| RNA-metabolising metallo-beta-lactamase family protein [Bacillus cer... gi\|49186885, gi\|... - gi\|49186885\|ref\|YP_030137.1\| hypothetical protein BAS3887 [Bacillus anthracis str. Sterne], gi\|49180... gi\|206978075, gi... - gi\|206978075\|ref\|ZP_03238959.1\| RNA-metabolising metallo-beta-lactamase family protein [Bacillus cer... gi\|21402029, gi\|... - gi\|65321369\|ref\|ZP_00394328.1\| COG0595: Predicted hydrolase of the metallo-beta-lactamase superfamil... gi\|217961464, gi... - gi\|217961464\|ref\|YP_002340032.1\| RNA-metabolising metallo-beta-lactamase family protein [Bacillus ce... gi\|30258694, gi\|... - gi\|30264049\|ref\|NP_846426.1\| hypothetical protein BA4190 [Bacillus anthracis str. Ames], gi\|30258694... gi\|218905108, gi... - gi\|218905108\|ref\|YP_002452942.1\| RNA-metabolising metallo-beta-lactamase family protein [Bacillus ce...	558.0	[0..133]	[688..1]
gi\|89202256, gi\|... - gi\|89202256\|ref\|ZP_01180983.1\| Conserved hypothetical protein MG423 [Bacillus cereus subsp. cytotoxi...	557.0	[0..133]	[688..1]
gi\|42783073, gi\|... - gi\|42783073\|ref\|NP_980320.1\| hypothetical protein BCE_4026 [Bacillus cereus ATCC 10987], gi\|42739001...	557.0	[0..133]	[688..1]
gi\|51892694, gi\|... - gi\|51892694\|ref\|YP_075385.1\| zinc-dependent hydrolase [Symbiobacterium thermophilum IAM 14863], gi\|5...	557.0	[0..137]	[688..7]
gi\|89085995, gi\|... - gi\|89099386\|ref\|ZP_01172263.1\| hypothetical protein B14911_22447 [Bacillus sp. NRRL B-14911], gi\|890...	556.0	[0..133]	[688..1]
gi\|78043054, gi\|... - gi\|78043054\|ref\|YP_360002.1\| metallo-beta-lactamase family protein [Carboxydothermus hydrogenoforman...	556.0	[0..137]	[688..4]
gi\|98660556 - gi\|98660556\|dbj\|GAA02269.1\| unnamed protein product [Pelotomaculum thermopropionicum SI]	555.0	[0..133]	[688..1]
gi\|20807702 - gi\|20807702\|ref\|NP_622873.1\| predicted hydrolase of the metallo-beta-lactamase superfamily [Thermoan... gi\|20516253, gi\|... - gi\|20807702\|ref\|NP_622873.1\| metallo-beta-lactamase superfamily hydrolase [Thermoanaerobacter tengco...	555.0	[0..135]	[688..1]

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Predicted Domain #1

Region A:
Residues: [1-139]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDNNQNNEN HENSSENSKA DEMRAGAFER FTNRKKRFRE NAQKNAEYSN HEASSHHKKE  60
   61 HRPNKKPNNH HKQKHAKTRN YAQEELDSNK VEGVTEILHV NERGTLGFHK ELKKGVEANN 120
  121 KIQVEHLNPH YKMNLNSKA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [140-561]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SVKITPLGGL GEIGGNMMVI ETPKSAIVID AGMSFPKEGL FGVDILIPDF SYLHQIKDKI  60
   61 AGIIITHAHE DHIGATPYLF KELQFPLYGT PLSLGLIGSK FDEHGLKKYR SYFKIVEKRC 120
  121 PISVGEFIIE WIHITHSIID SSALAIQTKA GTIIHTGDFK IDHTPVDNLP TDLYRLAHYG 180
  181 EKGVMLLLSD STNSHKSGTT PSESTIAPAF DTLFKEAQGR VIMSTFSSNI HRVYQAIQYG 240
  241 IKYNRKIAVI GRSMEKNLDI ARELGYIHLP YQSFIEANEV AKYPDNEILI VTTGSQGETM 300
  301 SALYRMATDE HRHISIKPND LVIISAKAIP GNEASVSAVL NFLIKKEAKV AYQEFDNIHV 360
  361 SGHAAQEEQK LMLRLIKPKF FLPVHGEYNH VARHKQTAIS CGVPEKNIYL MEDGDQVEVG 420
  421 PA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	56.69897
Match:	2i7tA
Description:	No description for 2i7tA was found.

Predicted Domain #3

Region A:
Residues: [562-689]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FIKKVGTIKS GKSYVDNQSN LSIDTSIVQQ REEVASAGVF VATIFVNKNK QALLESSQFS  60
   61 SLGLVGFKDE KPLIKEIQGG LEVLLKSSNA EILNNPKKLE DHTRNFIRKA LFKKFRKYPA 120
  121 IICHAHSF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits