YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|303918, gi\|541505
Organism:	Streptomyces sp.
Length:	144 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|303918, gi|541505.

Description	E-value	Query Range	Subject Range
gi\|25027043, gi\|... - gi\|25027043\|ref\|NP_737097.1\| 50S ribosomal protein L11 [Corynebacterium efficiens YS-314], gi\|234923...	201.0	[0..1]	[144..37]
RL11_STRLI - 50S ribosomal protein L11 OS=Streptomyces lividans GN=rplK PE=3 SV=1 RL11_STRVN - 50S ribosomal protein L11 OS=Streptomyces violaceoruber GN=rplK PE=3 SV=1 RL11_STRCO - 50S ribosomal protein L11 OS=Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) GN=rplK PE... RL11_STRCO - 50S ribosomal protein L11 OS=Streptomyces coelicolor GN=rplK PE=3 SV=1	199.0	[0..1]	[144..1]
gi\|109942287 - gi\|109942287\|emb\|CAJ84543.1\| L11 ribosomal protein [Streptomyces clavuligerus] gi\|254391409, gi... - gi\|254391409\|ref\|ZP_05006612.1\| ribosomal protein L11 [Streptomyces clavuligerus ATCC 27064], gi\|197...	199.0	[0..1]	[144..1]
RL11_RHOOB - 50S ribosomal protein L11 OS=Rhodococcus opacus (strain B4) GN=rplK PE=3 SV=1 RL11_RHOJR - 50S ribosomal protein L11 OS=Rhodococcus jostii (strain RHA1) GN=rplK PE=3 SV=1	198.0	[0..1]	[144..1]
RL11_STRAW - 50S ribosomal protein L11 OS=Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 / NB... RL11_STRAW - 50S ribosomal protein L11 OS=Streptomyces avermitilis GN=rplK PE=3 SV=1	197.0	[0..1]	[144..1]
RL11_COREF - 50S ribosomal protein L11 OS=Corynebacterium efficiens (strain DSM 44549 / YS-314 / AJ 12310 / JCM 1... RL11_COREF - 50S ribosomal protein L11 OS=Corynebacterium efficiens GN=rplK PE=3 SV=2	196.0	[0..1]	[144..1]
RL11_STRAT - 50S ribosomal protein L11 OS=Streptomyces antibioticus GN=rplK PE=3 SV=1	196.0	[0..1]	[144..1]
gi\|2447003\|dbj\|B... - ribosomal protein L11 [Streptomyces griseus] RL11_STRGG - 50S ribosomal protein L11 OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=r... RL11_STRGR - 50S ribosomal protein L11 OS=Streptomyces griseus GN=rplK PE=3 SV=1	196.0	[0..1]	[144..1]
RL11_STRLA - 50S ribosomal protein L11 OS=Streptomyces lavendulae GN=rplK PE=3 SV=1	196.0	[0..1]	[144..1]
RL11_STRVG - 50S ribosomal protein L11 OS=Streptomyces virginiae GN=rplK PE=3 SV=1	196.0	[0..1]	[144..1]

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Predicted Domain #1

Region A:
Residues: [1-144]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPKKKKVTG LIKLQIKAGA ANPAPPVGPA LGQHGVNIME FCKAYNAATE SQRGMVVPVE  60
   61 ITVYEDRSFT FVTKTPPAAR LILKHAGIEK GSGEPHKTKV ANVTRDQVRE IATIKMPDLN 120
  121 ANDLDAAEKI IAGTARSMGV TVEG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.30103
Match:	2e34A
Description:	No description for 2e34A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits