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View Structure Prediction Details

Protein: unc-5
Organism: Caenorhabditis elegans
Length: 567 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for unc-5.

Description E-value Query
Range
Subject
Range
gi|73961211 - gi|73961211|ref|XP_547438.2| PREDICTED: similar to High Incidence of Males (increased X chromosome l...
287.0 [0..2] [532..4349]

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Predicted Domain #1
Region A:
Residues: [1-97]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDEITITTQP KSGYVIRNKP LRLQCRANHA TKIRYKCSSK WIDDSRIEKL IGTDSTSGVG  60
   61 YIDASVDISR IDVDTSGHVD AFQCQCYASG DDDQDVV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 30.09691
Match: 2v9qA
Description: No description for 2v9qA was found.

Predicted Domain #2
Region A:
Residues: [98-501]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ASDVATVHLA YMRKHFLKSP VAQRVQEGTT LQLPCQAPES DPKAELTWYK DGVVVQPDAN  60
   61 VIRASDGSLI MSAARLSDSG NYTCEATNVA NSRKTDPVEV QIYVDGGWSE WSPWIGTCHV 120
  121 DCPLLRQHAH RIRDPHDVLP HQRRTRTCNN PAPLNDGEYC KGEEEMTRSC KVPCKLDGGW 180
  181 SSWSDWSACS SSCHRYRTRA CTVPPPMNGG QPCFGDDLMT QECPAQLCTA DSSRIVISDT 240
  241 AVYGSVASIF IVASFILAIL AMFCCKRGNS KKSKPLKPQK MNSEKAGGIY YSEPPGVRRL 300
  301 LLEHQHGTLL GEKISSCSQY FEPPPLPHST TLRSGKSAFS GYSSTRNAGS RAALIQECSS 360
  361 SSSGSGGKRT MLRTSSSNCS DDDNYATLYD YMEDKSVLGL DTSQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 15.30103
Match: 1w0rA
Description: Solution structure of dimeric form of properdin by X-ray solution scattering and analytical ultracentrifugation
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [502-567]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NIVAAQIDSN GARLSLSKSG ARLIVPELAV EGEKMLYLAV SDTLTDQPHL KRECKKILKI  60
   61 YISKIS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle