YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15603126, gi\|...
Organism:	Pasteurella multocida subsp. multocida str. Pm70
Length:	273 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15603126, gi|....

Description	E-value	Query Range	Subject Range
gi\|106895590, gi... - gi\|158321715\|ref\|YP_001514222.1\| phosphomethylpyrimidine kinase [Alkaliphilus oremlandii OhILAs], gi...	236.0	[0..4]	[265..1]
gi\|27468610, gi\|... - gi\|27468610\|ref\|NP_765247.1\| phosphomethylpyrimidine kinase [Staphylococcus epidermidis ATCC 12228],... gi\|57638290, gi\|... - gi\|57867632\|ref\|YP_189265.1\| phosphomethylpyrimidine kinase [Staphylococcus epidermidis RP62A], gi\|5...	236.0	[0..1]	[267..1]
gi\|28211403, gi\|... - gi\|28211403\|ref\|NP_782347.1\| hydroxymethylpyrimidine kinase [Clostridium tetani E88], gi\|28203844\|gb...	235.0	[0..3]	[272..6]
gi\|255517037 - gi\|255517037\|ref\|ZP_05384713.1\| putative phosphomethylpyrimidine kinase [Clostridium difficile QCD-9... gi\|255650139 - gi\|255650139\|ref\|ZP_05397041.1\| putative phosphomethylpyrimidine kinase [Clostridium difficile QCD-3... gi\|115250640, gi... - gi\|126699203\|ref\|YP_001088100.1\| putative phosphomethylpyrimidine kinase [Clostridium difficile 630]... gi\|254975231 - gi\|254975231\|ref\|ZP_05271703.1\| putative phosphomethylpyrimidine kinase [Clostridium difficile QCD-6... gi\|255092621 - gi\|255092621\|ref\|ZP_05322099.1\| putative phosphomethylpyrimidine kinase [Clostridium difficile CIP 1... gi\|255100727 - gi\|255100727\|ref\|ZP_05329704.1\| putative phosphomethylpyrimidine kinase [Clostridium difficile QCD-6... gi\|255314358 - gi\|255314358\|ref\|ZP_05355941.1\| putative phosphomethylpyrimidine kinase [Clostridium difficile QCD-7...	234.0	[0..1]	[264..1]
gi\|149948927, gi... - gi\|77686688\|ref\|ZP_00802021.1\| Phosphomethylpyrimidine kinase [Alkaliphilus metalliredigenes QYMF], ...	234.0	[0..4]	[264..1]
gi\|112822283, gi... - gi\|53692323\|ref\|ZP_00347200.1\| COG0351: Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Haem...	233.0	[0..1]	[265..1]
gi\|110802744, gi... - gi\|110802744\|ref\|YP_698658.1\| phosphomethylpyrimidine kinase [Clostridium perfringens SM101], gi\|110...	231.0	[0..1]	[264..1]
gi\|151222209, gi... - gi\|151222209\|ref\|YP_001333031.1\| phosphomethylpyrimidine kinase [Staphylococcus aureus subsp. aureus... gi\|221141613 - gi\|221141613\|ref\|ZP_03566106.1\| phosphomethylpyrimidine kinase [Staphylococcus aureus subsp. aureus ... gi\|87161070, gi\|... - gi\|87161070\|ref\|YP_494695.1\| phosphomethylpyrimidine kinase [Staphylococcus aureus subsp. aureus USA... gi\|221137058 - gi\|221137058\|ref\|ZP_03561869.1\| phosphomethylpyrimidine kinase [Staphylococcus aureus subsp. aureus ... gi\|87127044\|gb\|A... - phosphomethylpyrimidine kinase [Staphylococcus aureus subsp. aureus USA300], phosphomethylpyrimidine... gi\|57650767, gi\|... - gi\|57650767\|ref\|YP_186901.1\| phosphomethylpyrimidine kinase [Staphylococcus aureus subsp. aureus COL... gi\|88195996, gi\|... - gi\|88195996\|ref\|YP_500809.1\| phosphomethylpyrimidine kinase [Staphylococcus aureus subsp. aureus NCT...	231.0	[0..1]	[269..1]
gi\|269203729\|ref... - phosphomethylpyrimidine kinase [Staphylococcus aureus subsp. aureus ED98] THID_STAAM - Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase OS=Staphylococcus aureus (strain Mu50 / ATCC ... gi\|156722544, gi... - gi\|156980409\|ref\|YP_001442668.1\| phosphomethylpyrimidine kinase [Staphylococcus aureus subsp. aureus... THID_STAAN - Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase OS=Staphylococcus aureus (strain N315) GN=thi... gi\|90583378, gi\|... - gi\|90583378\|ref\|ZP_01239135.1\| Phosphomethylpyrimidine kinase [Staphylococcus aureus subsp. aureus J... gi\|25326087 - pir\|\|C90002 phosphomethylpyrimidine kinase [imported] - Staphylococcus aureus (strain N315) gi\|90585700, gi\|... - gi\|90585700\|ref\|ZP_01241408.1\| Phosphomethylpyrimidine kinase [Staphylococcus aureus subsp. aureus J... gi\|255006882 - gi\|255006882\|ref\|ZP_05145483.2\| phosphomethylpyrimidine kinase [Staphylococcus aureus subsp. aureus ...	231.0	[0..1]	[269..1]
gi\|227558822, gi... - gi\|227558822\|ref\|ZP_03988869.1\| phosphomethylpyrimidine kinase [Staphylococcus aureus subsp. aureus ... gi\|227852200, gi... - gi\|227899566\|ref\|ZP_04017371.1\| phosphomethylpyrimidine kinase [Staphylococcus aureus subsp. aureus ... THID_STAAR - Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase OS=Staphylococcus aureus (strain MRSA252) GN=...	230.0	[0..1]	[269..1]

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Predicted Domain #1

Region A:
Residues: [1-273]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNIPIALTI AGSDNCGGAG FQADLKTFQM QRVFGMTTIT AIPVQNSLGV YDIHPVPLNI  60
   61 IEGQLKAIAD DYQVNAFKIG MLGNTAIIEC IAHALKKYDF GRMVLDPVMY AKGGAALLEP 120
  121 DAVEALRTLL VPNAEVITPN LPEAEALTGI NIVDDNTACE AAEKLRAMGV RHAVIKGGHS 180
  181 ENSQSDVCRD WLFTPTEILH FDSPRFNTRH THGTGCTFSA CIAAELAKGA QVVDAVKTAK 240
  241 AFITAAISHP LNIGHGHGPT NHWAYAECNQ KSR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	51.221849
Match:	2i5bA
Description:	No description for 2i5bA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits