YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|542156160\|ref...
Organism:	Zonotrichia albicollis
Length:	206 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|542156160|ref....

Description	E-value	Query Range	Subject Range
gi\|481203 - gi\|481203\|pir\|\|S38309 SNAP-25 protein - chicken	1.0E-51	[1..184]	[1..184]
gi\|50841439 - gi\|50841439\|gb\|AAT84082.1\| synaptosomal-associated protein [Carassius auratus]	1.0E-45	[38..206]	[1..166]
gi\|55731614 - gi\|55731614\|emb\|CAH92513.1\| hypothetical protein [Pongo abelii] gi\|55731614\|emb\|... - hypothetical protein [Pongo pygmaeus]	5.0E-44	[1..206]	[1..206]
gi\|27448107, gi\|... - gi\|27448107\|gb\|AAO13788.1\|AF335586_1 SNAP25a [Xenopus laevis], gi\|148232204\|ref\|NP_001083880.1\| SNAP...	5.0E-44	[1..206]	[1..206]
gi\|62898966 - gi\|62898966\|dbj\|BAD97337.1\| synaptosomal-associated protein 25 isoform SNAP25B variant [Homo sapiens...	6.0E-44	[1..206]	[1..206]
SNAP25 - synaptosomal-associated protein, 25kDa gi\|2116630 - gi\|2116630\|dbj\|BAA20152.1\| SNAP-25B [Rattus rattus] SNP25_PANTR - Synaptosomal-associated protein 25 OS=Pan troglodytes GN=SNAP25 PE=2 SV=1 CCDS13110.1_1 - null tr\|G1TAX9\|G1TAX9... - pep:novel chromosome:oryCun2:4:25910953:26006153:-1 gene:ENSOCUG00000016119 transcript:ENSOCUT000000... SNP25_RAT - Synaptosomal-associated protein 25 OS=Rattus norvegicus GN=Snap25 PE=1 SV=1 SNP25_MOUSE - Synaptosomal-associated protein 25 OS=Mus musculus GN=Snap25 PE=1 SV=1 gi\|73991287, gi\|... - gi\|73991287\|ref\|XP_859425.1\| PREDICTED: similar to synaptosomal-associated protein 25 isoform 13 [Ca... gi\|149640834 - gi\|149640834\|ref\|XP_001513799.1\| PREDICTED: similar to synaptosomal associated protein-25 isoform 1 ... gi\|208967516 - gi\|208967516\|dbj\|BAG73772.1\| synaptosomal-associated protein [synthetic construct] SNP25_BOVIN - Synaptosomal-associated protein 25 OS=Bos taurus GN=SNAP25 PE=1 SV=1 gi\|224047421 - gi\|224047421\|ref\|XP_002199106.1\| PREDICTED: synaptosomal-associated protein, 25kDa isoform 2 [Taenio... SNP25_CHICK - Synaptosomal-associated protein 25 OS=Gallus gallus GN=SNAP25 PE=1 SV=1 gi\|56342334\|dbj\|... - synaptosomal-associated 25kD protein [Pan troglodytes] SNP25_MACMU - Synaptosomal-associated protein 25 OS=Macaca mulatta GN=SNAP25 PE=2 SV=1 gi\|149733071 - gi\|149733071\|ref\|XP_001493159.1\| PREDICTED: similar to synaptosomal-associated protein 25 isoform 1 ... gi\|542156158\|ref... - PREDICTED: synaptosomal-associated protein 25 isoform X1 [Zonotrichia albicollis] gi\|126303704 - gi\|126303704\|ref\|XP_001374436.1\| PREDICTED: similar to synaptosomal associated protein-25 isoform 1 ...	7.0E-44	[1..206]	[1..206]

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Predicted Domain #1

Region A:
Residues: [1-105]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEDADMRNE LEEMQRRADQ LADESLESTR RMLQLVEESK DAGIRTLVML DEQGEQLDRV  60
   61 EEGMNHINQD MKEAEKNLKD LGKCCGLFIC PCNKLKSSDA YKKAW

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	9.39794
Match:	1jthA
Description:	Synaptosomal-assosiated protein SNAP-25
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [106-206]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GNNQDGVVAS QPARVVDERE QMAISGGFIR RVTNDARENE MDENLEQVSG IIGNLRHMAL  60
   61 DMGNEIDTQN RQIDRIMEKA DSNKTRIDEA NQRATKMLGS G

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	14.69897
Match:	1sfcD
Description:	Synaptosomal-assosiated protein SNAP-25
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits