YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: PPE24_MYCTU
Organism: Mycobacterium tuberculosis
Length: 1053 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PPE24_MYCTU.

Description E-value Query
Range
Subject
Range
gi|254231946, gi... - gi|81254371|ref|ZP_00878894.1| COG5651: PPE-repeat proteins [Mycobacterium tuberculosis C], gi|25423...
448.0 [0..1] [1053..1]
PPE24_MYCTO - Uncharacterized PPE family protein PPE24 OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) G...
438.0 [0..1] [1053..1]
gi|31792941, gi|... - gi|31792941|ref|NP_855434.1| PPE family protein [Mycobacterium bovis AF2122/97], gi|31618532|emb|CAD...
409.0 [0..1] [1053..1]
gi|148720028, gi... - gi|76785885|ref|ZP_00773048.1| COG5651: PPE-repeat proteins [Mycobacterium tuberculosis F11], gi|148...
365.0 [0..1] [1051..1]
gi|38490177, gi|... - gi|57116726|ref|YP_177721.1| PPE family protein [Mycobacterium tuberculosis H37Rv], gi|38490177|emb|...
gi|7478742 - gi|7478742|pir||D70575 probable PPE protein - Mycobacterium tuberculosis (strain H37RV)
350.0 [0..1] [1052..1]

Back

Predicted Domain #1
Region A:
Residues: [1-222]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNFSVLPPEI NSALIFAGAG PEPMAAAATA WDGLAMELAS AAASFGSVTS GLVGGAWQGA  60
   61 SSSAMAAAAA PYAAWLAAAA VQAEQTAAQA AAMIAEFEAV KTAVVQPMLV AANRADLVSL 120
  121 VMSNLFGQNA PAIAAIEATY EQMWAADVSA MSAYHAGASA IASALSPFSK PLQNLAGLPA 180
  181 WLASGAPAAA MTAAAGIPAL AGGPTAINLG IANVGGGNVG NA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 27.0
Match: 2g38B
Description: No description for 2g38B was found.

Predicted Domain #2
Region A:
Residues: [223-459]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NNGLANIGNA NLGNYNFGSG NFGNSNIGSA SLGNNNIGFG NLGSNNVGVG NLGNLNTGFA  60
   61 NTGLGNFGFG NTGNNNIGIG LTGNNQIGIG GLNSGTGNFG LFNSGSGNVG FFNSGNGNFG 120
  121 IGNSGNFNTG GWNSGHGNTG FFNAGSFNTG MLDVGNANTG SLNTGSYNMG DFNPGSSNTG 180
  181 TFNTGNANTG FLNAGNINTG VFNIGHMNNG LFNTGDMNNG VFYRGVGQGS LQFSITT

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [460-589]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PDLTLPPLQI PGISVPAFSL PAITLPSLNI PAATTPANIT VGAFSLPGLT LPSLNIPAAT  60
   61 TPANITVGAF SLPGLTLPSL NIPAATTPAN ITVGAFSLPG LTLPSLNIPA ATTPANITVG 120
  121 AFSLPGLTLP 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [590-786]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SLNIPAATTP ANITVGAFSL PGLTLPSLNI PAATTPANIT VSGFQLPPLS IPSVAIPPVT  60
   61 VPPITVGAFN LPPLQIPEVT IPQLTIPAGI TIGGFSLPAI HTQPITVGQI GVGQFGLPSI 120
  121 GWDVFLSTPR ITVPAFGIPF TLQFQTNVPA LQPPGGGLST FTNGALIFGE FDLPQLVVHP 180
  181 YTLTGPIVIG SFFLPAF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [787-1053]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NIPGIDVPAI NVDGFTLPQI TTPAITTPEF AIPPIGVGGF TLPQITTQEI ITPELTINSI  60
   61 GVGGFTLPQI TTPPITTPPL TIDPINLTGF TLPQITTPPI TTPPLTIDPI NLTGFTLPQI 120
  121 TTPPITTPPL TIEPIGVGGF TTPPLTVPGI HLPSTTIGAF AIPGGPGYFN SSTAPSSGFF 180
  181 NSGAGGNSGF GNNGSGLSGW FNTNPAGLLG GSGYQNFGGL SSGFSNLGSG VSGFANRGIL 240
  241 PFSVASVVSG FANIGTNLAG FFQGTTS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle