YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|11351182
Organism:	Pseudomonas aeruginosa
Length:	661 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|11351182.

Description	E-value	Query Range	Subject Range
gi\|194554807, gi... - gi\|84324003\|ref\|ZP_00972068.1\| COG1292: Choline-glycine betaine transporter [Pseudomonas aeruginosa ...	0.0	[1..661]	[1..661]
gi\|152986479, gi... - gi\|94417776\|ref\|ZP_01297593.1\| hypothetical protein PaerP_01000558 [Pseudomonas aeruginosa PA7], gi\|...	0.0	[1..661]	[1..661]
gi\|26990662, gi\|... - gi\|26990662\|ref\|NP_746087.1\| choline/carnitine/betaine transporter family protein [Pseudomonas putid... tr\|E4RG06\|E4RG06... - Choline/carnitine/betaine transporter family protein OS=Pseudomonas putida (strain BIRD-1) GN=PPUBIR...	0.0	[1..660]	[1..656]
gi\|33574349 - gi\|33574349\|emb\|CAE38685.1\| high-affinity choline transport protein [Bordetella parapertussis] gi\|33597920 - gi\|33597920\|ref\|NP_885563.1\| high-affinity choline transport protein [Bordetella parapertussis 12822...	0.0	[8..660]	[6..651]
gi\|33571643, gi\|... - gi\|33591999\|ref\|NP_879643.1\| high-affinity choline transport protein [Bordetella pertussis Tohama I]... gi\|33602825, gi\|... - gi\|33602825\|ref\|NP_890385.1\| high-affinity choline transport protein [Bordetella bronchiseptica RB50...	0.0	[8..660]	[6..651]
gi\|78486248, gi\|... - gi\|78486248\|ref\|YP_392173.1\| choline/carnitine/betaine transport [Thiomicrospira crunogena XCL-2], g...	0.0	[2..661]	[3..660]
gi\|83648930, gi\|... - gi\|83648930\|ref\|YP_437365.1\| choline-glycine betaine transporter [Hahella chejuensis KCTC 2396], gi\|...	0.0	[6..661]	[4..657]
gi\|75212178 - gi\|75212178\|ref\|ZP_00712218.1\| COG1292: Choline-glycine betaine transporter [Escherichia coli B171] gi\|83586675 - gi\|83586675\|ref\|ZP_00925307.1\| COG1292: Choline-glycine betaine transporter [Escherichia coli 101-1]	0.0	[2..661]	[6..665]
gi\|33329722 - gi\|33329722\|gb\|AAQ10261.1\| secondary glycine betaine transporter BetU [Escherichia coli] gi\|218435010, gi... - gi\|218707913\|ref\|YP_002415432.1\| betaine-carnitine-choline transporter family member BetU [Escherich... gi\|253976107, gi... - gi\|254164204\|ref\|YP_003047314.1\| secondary glycine betaine transporter BetU [Escherichia coli B str.... gi\|251787526, gi... - gi\|251787526\|ref\|YP_003001830.1\| hypothetical protein B21_04111 [Escherichia coli BL21], gi\|24237979... gi\|254290954, gi... - gi\|254290954\|ref\|YP_003056704.1\| secondary glycine betaine transporter BetU [Escherichia coli BL21(D...	0.0	[2..661]	[8..667]
gi\|75188987 - gi\|75188987\|ref\|ZP_00702254.1\| COG1292: Choline-glycine betaine transporter [Escherichia coli E24377...	0.0	[2..661]	[6..665]

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Predicted Domain #1

Region A:
Residues: [1-82]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METPTTPRST LNPPVFYTSA ALILALVLFT VLLQEEAQSL FNHVQQWIIT NASWFYVLAV  60
   61 ALILISVVFL AVSRYGDIKL GP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [83-324]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DHSRPDYRNT TWFAMLFSAG MGIGLMFFGV AEPVMHFTTP PVGEPNTVQA AKEAMKLTFF  60
   61 HWGLHAWAIY AIVALILAFF SYRHGLPLTL RSALYPLIGE RIYGPIGHAV DIFAIIGTVF 120
  121 GVATSLGYGV LQINSGLHHL FGWPVNQTVQ IALIAATCGL ATLSVASGLD RGIRILSELN 180
  181 LSLAVILLLF VLVLGPTVFL LQTYVQNTGA YLSDIVNKTF NLYAYEPTDW IGGWTLLYWG 240
  241 WW

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [325-519]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LSWSPFVGLF IARISRGRTI REFVCGVLFV PAGFTLLWMT VFGDTAIHMV LQEGFTQLAE  60
   61 VVNQDSSVAL FAFLEHFPLG SVISLVAVLM VVVFFVTSAD SGALVVDMLA SSGKDHSPLW 120
  121 QRIFWSVLMG VVAIALLLAD GLKALQTATI ASALPFSIVL LASIWGLFKA LHLDATKRGI 180
  181 RYQALTFSRP TTRSG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [520-661]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ASEGDGWQRR LRNIAMFPRR SHVNRFITDV ARPACEDVAA ELRKQGYEVQ VQDGEDGRVR  60
   61 LEVSHGGEVD FIYEVRPRAF TTPSFVMRDT EDSSESRKYF RAEVHLQEGG QDYDIMGWSR 120
  121 DGVIGDILDQ YERHMHFLHV VR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits