YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|116052348, gi...
Organism:	Pseudomonas aeruginosa UCBPP-PA14
Length:	283 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|116052348, gi....

Description	E-value	Query Range	Subject Range
gi\|68346410, gi\|... - gi\|70732111\|ref\|YP_261867.1\| formyltetrahydrofolate deformylase [Pseudomonas fluorescens Pf-5], gi\|6...	1.0E-90	[1..282]	[13..294]
gi\|77460657, gi\|... - gi\|77460657\|ref\|YP_350164.1\| formyltetrahydrofolate deformylase [Pseudomonas fluorescens Pf0-1], gi\|...	5.0E-89	[1..282]	[1..282]
gi\|49083322 - gi\|49083322\|gb\|AAT51001.1\| PA4314 [synthetic construct]	8.0E-89	[1..283]	[1..283]
gi\|83723946, gi\|... - gi\|83749369\|ref\|ZP_00946364.1\| Formyltetrahydrofolate deformylase [Ralstonia solanacearum UW551], gi...	9.0E-89	[4..282]	[33..314]
gi\|94413979, gi\|... - gi\|94413979\|ref\|ZP_01293848.1\| hypothetical protein PaerP_01004249 [Pseudomonas aeruginosa PA7], gi\|...	1.0E-88	[1..283]	[1..283]
gi\|17546592 - gi\|17546592\|ref\|NP_519994.1\| formyltetrahydrofolate deformylase [Ralstonia solanacearum GMI1000] gi\|17428891 - gi\|17428891\|emb\|CAD15575.1\| probable formyltetrahydrofolate deformylase protein [Ralstonia solanacea...	3.0E-88	[4..282]	[6..287]
gi\|29607500, gi\|... - gi\|29830389\|ref\|NP_825023.1\| formyltetrahydrofolate deformylase [Streptomyces avermitilis MA-4680], ...	4.0E-88	[2..282]	[13..292]
gi\|95109350, gi\|... - gi\|95109350\|emb\|CAK14050.1\| putative formyltetrahydrofolate deformylase PurU-2 [Pseudomonas entomoph... gi\|95109350 - gi\|95109350\|emb\|CAK14050.1\| putative formyltetrahydrofolate deformylase PurU-2 [Pseudomonas entomoph...	9.0E-88	[1..283]	[1..283]
gi\|117927364, gi... - gi\|88932266\|ref\|ZP_01137958.1\| Formyltetrahydrofolate deformylase [Acidothermus cellulolyticus 11B],...	1.0E-87	[1..282]	[1..282]
tr\|I7ATZ2\|I7ATZ2... - Formyltetrahydrofolate deformylase OS=Pseudomonas putida (strain DOT-T1E) GN=purU PE=4 SV=1 tr\|E4RI91\|E4RI91... - PurU_2 OS=Pseudomonas putida (strain BIRD-1) GN=purU_2 PE=4 SV=1 gi\|82738537, gi\|... - gi\|82738537\|ref\|ZP_00901368.1\| Formyltetrahydrofolate deformylase [Pseudomonas putida F1], gi\|827144... gi\|26988101, gi\|... - gi\|26988101\|ref\|NP_743526.1\| formyltetrahydrofolate deformylase [Pseudomonas putida KT2440], gi\|2498...	1.0E-87	[1..283]	[1..283]

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Predicted Domain #1

Region A:
Residues: [1-85]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRTFRLVIAC PDGVGIVAKV SNFLATYNGW ITEASHHSDN DNGWFFMRHE IRADSLPFDL  60
   61 DGFRQAFAPI AREFSMEWRI TDSEV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	12.69897
Match:	1zpvA
Description:	ACT domain protein from Streptococcus pneumoniae
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transferase activity, transferring aldehyde or ketonic groups	1.82494854621265	bayes_pls_golite062009
catalytic activity	1.01569611874813	bayes_pls_golite062009
transferase activity	0.07375530569672	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [86-283]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KKRVVLMASK ESHCLADLLH RWHSGELDCE IPCVIANHDD LRSMVEWHGI PYFHVPVDPQ  60
   61 DKQPAFDEVS RLIDEHGADC IVLARYMQIL PPDLCRKYAH QVINIHHSFL PSFIGAKPYH 120
  121 QASKRGVKLI GATSHYVTEE LDAGPIIEQD VVRVTHRDNV EDMVRLGKDV EKLVLARGLR 180
  181 YHLEDRVLVH GNKTVVFD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	52.0
Match:	1c3eA
Description:	Glycinamide ribonucleotide transformylase, GART
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
hydroxymethyl-, formyl- and related transferase activity	4.30911230869939	bayes_pls_golite062009
glycine hydroxymethyltransferase activity	3.93829204810029	bayes_pls_golite062009
phosphoribosylglycinamide formyltransferase activity	3.16061609458624	bayes_pls_golite062009
catalytic activity	2.53047786804923	bayes_pls_golite062009
methyltransferase activity	1.49959796419617	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	1.49630496597474	bayes_pls_golite062009
transferase activity	1.21569993951472	bayes_pls_golite062009
formyltetrahydrofolate deformylase activity	0.85803295611657	bayes_pls_golite062009
methionyl-tRNA formyltransferase activity	0.27296524587077	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions:

Predicted functions: