YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15596075, gi\|...
Organism:	Pseudomonas aeruginosa PAO1
Length:	275 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15596075, gi|....

Description	E-value	Query Range	Subject Range
gi\|32040890, gi\|... - gi\|32040890\|ref\|ZP_00138473.1\| COG3777: Uncharacterized conserved protein [Pseudomonas aeruginosa UC...	0.0	[1..275]	[1..275]
gi\|94418020, gi\|... - gi\|94418020\|ref\|ZP_01297836.1\| hypothetical protein PaerP_01000169 [Pseudomonas aeruginosa PA7], gi\|...	0.0	[1..275]	[1..275]
gi\|63256119, gi\|... - gi\|66045412\|ref\|YP_235253.1\| hypothetical protein Psyr_2172 [Pseudomonas syringae pv. syringae B728a...	0.0	[2..274]	[3..275]
gi\|72120710, gi\|... - gi\|73537373\|ref\|YP_297740.1\| hypothetical protein Reut_B3538 [Ralstonia eutropha JMP134], gi\|7212071...	7.0E-97	[5..275]	[9..286]
gi\|93356677, gi\|... - gi\|94312825\|ref\|YP_586034.1\| hypothetical protein Rmet_3897 [Ralstonia metallidurans CH34], gi\|93356... gi\|222872792, gi... - gi\|224163456\|ref\|XP_002338561.1\| predicted protein [Populus trichocarpa], gi\|222872792\|gb\|EEF09923.1...	6.0E-96	[4..275]	[7..285]
gi\|46315875, gi\|... - gi\|78060833\|ref\|YP_367408.1\| hypothetical protein Bcep18194_C7720 [Burkholderia sp. 383], gi\|7796538...	8.0E-96	[3..274]	[11..285]
gi\|70730015, gi\|... - gi\|70730015\|ref\|YP_259754.1\| hypothetical protein PFL_2647 [Pseudomonas fluorescens Pf-5], gi\|683443...	3.0E-95	[1..275]	[49..323]
gi\|91777550, gi\|... - gi\|91777550\|ref\|YP_552758.1\| hypothetical protein Bxe_B2585 [Burkholderia xenovorans LB400], gi\|9169...	4.0E-95	[1..274]	[1..279]
gi\|105897719, gi... - gi\|67656673\|ref\|ZP_00454055.1\| conserved hypothetical protein [Burkholderia cenocepacia AU 1054], gi... gi\|67102562, gi\|... - gi\|67663793\|ref\|ZP_00461072.1\| conserved hypothetical protein [Burkholderia cenocepacia HI2424], gi\|...	2.0E-93	[3..274]	[11..285]
gi\|84352304 - gi\|84352304\|ref\|ZP_00977271.1\| COG3777: Uncharacterized conserved protein [Burkholderia cenocepacia ...	5.0E-93	[3..274]	[11..285]

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Predicted Domain #1

Region A:
Residues: [1-275]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSESAFAPWI GRQEETHDQL SRNLVKRIAA TFGEPTPAHG EALPPLWHWA FFQDPVEAAG  60
   61 LGVDGHPARG GFLPPADDRN RMWAGGRLEF HQPLRVGGEA SRTSTILRVE EKHGRSGALL 120
  121 FVTLRHDYRQ DGQLALSEEH DIVYREPTPP KLGGTEALPE GDWREALEPD PVLLFRYSAV 180
  181 TFNGHRIHYD WPYVTDAEGY PGLVVHGPLI ATLALRAFCR ANPQARLRRF AYRGLRPLIC 240
  241 PEPFEVGGRL LAAGKAEVWV GNGAGLAQRG DVEFD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.045757
Match:	1s9cA
Description:	Crystal structure analysis of the 2-enoyl-CoA hydratase 2 domain of human peroxisomal multifunctional enzyme type 2
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
CoA hydrolase activity	2.3187640589669	bayes_pls_golite062009
thiolester hydrolase activity	1.14125301545576	bayes_pls_golite062009
acyl-CoA thioesterase activity	0.900771387775228	bayes_pls_golite062009
catalytic activity	0.74605540351792	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: