YRC Public Data Repository - Protein Structure Prediction

Protein:	lcl\|NC_016856.1_...
Organism:	Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S
Length:	857 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lcl|NC_016856.1_....

Description	E-value	Query Range	Subject Range
gi\|238798951, gi... - gi\|77960423\|ref\|ZP_00824294.1\| COG0542: ATPases with chaperone activity, ATP-binding subunit [Yersin...	0.0	[1..857]	[1..857]
gi\|238791396, gi... - gi\|77976237\|ref\|ZP_00831746.1\| COG0542: ATPases with chaperone activity, ATP-binding subunit [Yersin...	0.0	[1..857]	[1..857]
gi\|15803116, gi\|... - gi\|15803116\|ref\|NP_289147.1\| protein disaggregation chaperone [Escherichia coli O157:H7 EDL933], gi\|... gi\|227834799, gi... - gi\|227888159\|ref\|ZP_04005964.1\| endopeptidase Clp [Escherichia coli 83972], gi\|227834799\|gb\|EEJ45265... gi\|226839293, gi... - gi\|254037669\|ref\|ZP_04871727.1\| heat shock protein [Escherichia sp. 1_1_43], gi\|226839293\|gb\|EEH7131... gi\|26109361, gi\|... - gi\|26248955\|ref\|NP_754995.1\| protein disaggregation chaperone [Escherichia coli CFT073], gi\|26109361... gi\|209762704, gi... - gi\|25289895\|pir\|\|E85905 heat shock protein [imported] - Escherichia coli (strain O157:H7, substrain ...	0.0	[1..857]	[5..861]
gi\|238909506 - gi\|238909506\|ref\|ZP_04653343.1\| protein disaggregation chaperone [Salmonella enterica subsp. enteric... gi\|224584513, gi... - gi\|224584513\|ref\|YP_002638311.1\| ClpB protein (heat shock protein f84.1) [Salmonella enterica subsp.... gi\|204929414, gi... - gi\|204929414\|ref\|ZP_03220488.1\| chaperone protein clpB [Salmonella enterica subsp. enterica serovar ... gi\|200388055, gi... - gi\|200388055\|ref\|ZP_03214667.1\| chaperone protein clpB [Salmonella enterica subsp. enterica serovar ... gi\|62181233, gi\|... - gi\|62181233\|ref\|YP_217650.1\| protein disaggregation chaperone [Salmonella enterica subsp. enterica s... gi\|197937776, gi... - gi\|198243260\|ref\|YP_002216671.1\| chaperone protein clpB [Salmonella enterica subsp. enterica serovar... gi\|197095031, gi... - gi\|197363554\|ref\|YP_002143191.1\| protein disaggregation chaperone [Salmonella enterica subsp. enteri... gi\|197248685, gi... - gi\|197248685\|ref\|YP_002147563.1\| ATP-dependent chaperone protein ClpB [Salmonella enterica subsp. en... gi\|56414627, gi\|... - gi\|56414627\|ref\|YP_151702.1\| protein disaggregation chaperone [Salmonella enterica subsp. enterica s... gi\|194736447, gi... - gi\|194736447\|ref\|YP_002115671.1\| ATP-dependent chaperone protein ClpB [Salmonella enterica subsp. en... gi\|194459233, gi... - gi\|194472869\|ref\|ZP_03078853.1\| ATP-dependent chaperone protein ClpB [Salmonella enterica subsp. ent... gi\|194443281, gi... - gi\|194443281\|ref\|YP_002041924.1\| ATP-dependent chaperone protein ClpB [Salmonella enterica subsp. en... gi\|168822477, gi... - gi\|205341135\|gb\|EDZ27899.1\| chaperone protein clpB [Salmonella enterica subsp. enterica serovar Welt... gi\|168464169, gi... - gi\|195633279\|gb\|EDX51693.1\| ATP-dependent chaperone protein ClpB [Salmonella enterica subsp. enteric... gi\|168262170, gi... - gi\|205349068\|gb\|EDZ35699.1\| chaperone protein clpB [Salmonella enterica subsp. enterica serovar Hada...	0.0	[1..857]	[1..857]
gi\|238713243, gi... - gi\|77956726\|ref\|ZP_00820808.1\| COG0542: ATPases with chaperone activity, ATP-binding subunit [Yersin...	0.0	[1..857]	[1..857]
gi\|21957649, gi\|... - gi\|22124822\|ref\|NP_668245.1\| protein disaggregation chaperone [Yersinia pestis KIM], gi\|21957649\|gb\|... gi\|45435364, gi\|... - gi\|45440507\|ref\|NP_992046.1\| protein disaggregation chaperone [Yersinia pestis biovar Microtus str. ...	0.0	[1..857]	[8..864]
gi\|188487823, gi... - gi\|75513198\|ref\|ZP_00735640.1\| COG0542: ATPases with chaperone activity, ATP-binding subunit [Escher... gi\|74313151, gi\|... - gi\|74313151\|ref\|YP_311570.1\| protein disaggregation chaperone [Shigella sonnei Ss046], gi\|73856628\|g... gi\|75236016, gi\|... - gi\|75236016\|ref\|ZP_00720150.1\| COG0542: ATPases with chaperone activity, ATP-binding subunit [Escher... gi\|193064051, gi... - gi\|75258013\|ref\|ZP_00729487.1\| COG0542: ATPases with chaperone activity, ATP-binding subunit [Escher... gi\|81246456, gi\|... - gi\|82545045\|ref\|YP_408992.1\| protein disaggregation chaperone [Shigella boydii Sb227], gi\|81246456\|g... gi\|83585276, gi\|... - gi\|83585276\|ref\|ZP_00923925.1\| COG0542: ATPases with chaperone activity, ATP-binding subunit [Escher... gi\|189354548, gi... - gi\|189354548\|gb\|EDU72967.1\| ATP-dependent chaperone ClpB [Escherichia coli O157:H7 str. EC4401], gi\|... gi\|157080262, gi... - gi\|75187341\|ref\|ZP_00700608.1\| COG0542: ATPases with chaperone activity, ATP-binding subunit [Escher... gi\|189367288, gi... - gi\|189367288\|gb\|EDU85704.1\| ATP-dependent chaperone ClpB [Escherichia coli O157:H7 str. EC4501], gi\|... gi\|168771698, gi... - gi\|189359601\|gb\|EDU78020.1\| ATP-dependent chaperone ClpB [Escherichia coli O157:H7 str. EC4486], gi\|... gi\|187770676, gi... - gi\|187770676\|gb\|EDU34520.1\| ATP-dependent chaperone ClpB [Escherichia coli O157:H7 str. EC4196], gi\|... gi\|75214716 - gi\|75214716\|ref\|ZP_00713224.1\| COG0542: ATPases with chaperone activity, ATP-binding subunit [Escher... gi\|189003333, gi... - gi\|189003333\|gb\|EDU72319.1\| ATP-dependent chaperone ClpB [Escherichia coli O157:H7 str. EC4076], gi\|... gi\|75227675, gi\|... - gi\|75227675\|ref\|ZP_00714416.1\| COG0542: ATPases with chaperone activity, ATP-binding subunit [Escher... gi\|189370894, gi... - gi\|189370894\|gb\|EDU89310.1\| ATP-dependent chaperone ClpB [Escherichia coli O157:H7 str. EC869], gi\|1... gi\|157067748, gi... - gi\|75196607\|ref\|ZP_00706677.1\| COG0542: ATPases with chaperone activity, ATP-binding subunit [Escher... gi\|168801710, gi... - gi\|189376181\|gb\|EDU94597.1\| ATP-dependent chaperone ClpB [Escherichia coli O157:H7 str. EC508], gi\|1... gi\|194411789, gi... - gi\|75208572\|ref\|ZP_00708885.1\| COG0542: ATPases with chaperone activity, ATP-binding subunit [Escher... gi\|170019129, gi... - gi\|170019129\|ref\|YP_001724083.1\| protein disaggregation chaperone [Escherichia coli ATCC 8739], gi\|1... gi\|254593940, gi... - gi\|254794540\|ref\|YP_003079377.1\| protein disaggregation chaperone [Escherichia coli O157:H7 str. TW1... gi\|253974464, gi... - gi\|254162563\|ref\|YP_003045671.1\| protein disaggregation chaperone [Escherichia coli B str. REL606], ... gi\|254289324, gi... - gi\|254289324\|ref\|YP_003055072.1\| protein disaggregation chaperone [Escherichia coli BL21(DE3)], gi\|2... gi\|251785915, gi... - gi\|251785915\|ref\|YP_003000219.1\| hypothetical protein B21_02446 [Escherichia coli BL21], gi\|24237818... gi\|238901753, gi... - gi\|238901753\|ref\|YP_002927549.1\| protein disaggregation chaperone [Escherichia coli BW2952], gi\|2388... gi\|188014008, gi... - gi\|188014008\|gb\|EDU52130.1\| ATP-dependent chaperone ClpB [Escherichia coli O157:H7 str. EC4113], gi\|... EG10157 - protein disaggregation chaperone / Bichaperone with DnaK for protein disaggregation; disaggregase; p... CLPB_ECOLI - Chaperone clpB (Heat-shock protein F84.1) - Escherichia coli CLPB_ECOL6 - Chaperone protein ClpB OS=Escherichia coli O6 GN=clpB PE=3 SV=1 gi\|89109394, gi\|... - gi\|89109394\|ref\|AP_003174.1\| protein disaggregation chaperone [Escherichia coli str. K-12 substr. W3... gi\|13362926, gi\|... - gi\|15832709\|ref\|NP_311482.1\| protein disaggregation chaperone [Escherichia coli O157:H7 str. Sakai],... gi\|110642755, gi... - gi\|110642755\|ref\|YP_670485.1\| protein disaggregation chaperone [Escherichia coli 536], gi\|110344347\|... CLPB_ECO57 - Chaperone protein ClpB OS=Escherichia coli O157:H7 GN=clpB PE=3 SV=1 EG10157 - protein disaggregation chaperone / Bichaperone with DnaK for protein disaggregation; disaggregase; p... gi\|215266003, gi... - gi\|215487931\|ref\|YP_002330362.1\| protein disaggregation chaperone [Escherichia coli O127:H6 str. E23... gi\|217326744, gi... - gi\|217326744\|ref\|ZP_03442827.1\| ATP-dependent chaperone ClpB [Escherichia coli O157:H7 str. TW14588]... gi\|218361940, gi... - gi\|218555172\|ref\|YP_002388085.1\| protein disaggregation chaperone [Escherichia coli IAI1], gi\|218361... gi\|218428275, gi... - gi\|218690711\|ref\|YP_002398923.1\| protein disaggregation chaperone [Escherichia coli ED1a], gi\|218428... gi\|218696217, gi... - gi\|218696217\|ref\|YP_002403884.1\| protein disaggregation chaperone [Escherichia coli 55989], gi\|21835... gi\|218371090, gi... - gi\|218701104\|ref\|YP_002408733.1\| protein disaggregation chaperone [Escherichia coli IAI39], gi\|21837... gi\|218433191, gi... - gi\|218706094\|ref\|YP_002413613.1\| protein disaggregation chaperone [Escherichia coli UMN026], gi\|2184... gi\|169890032, gi... - gi\|170082197\|ref\|YP_001731517.1\| protein disaggregation chaperone [Escherichia coli str. K-12 substr... gi\|170683980, gi... - gi\|170683980\|ref\|YP_001744777.1\| ATP-dependent chaperone protein ClpB [Escherichia coli SMS-3-5], gi... gi\|195940187 - gi\|195940187\|ref\|ZP_03085569.1\| protein disaggregation chaperone [Escherichia coli O157:H7 str. EC40... gi\|208805997, gi... - gi\|208805997\|ref\|ZP_03248334.1\| ATP-dependent chaperone ClpB [Escherichia coli O157:H7 str. EC4206],... gi\|208813052, gi... - gi\|208813052\|ref\|ZP_03254381.1\| ATP-dependent chaperone ClpB [Escherichia coli O157:H7 str. EC4045],... gi\|124500885, gi... - gi\|124527993\|ref\|ZP_01699346.1\| ATPase AAA-2 domain protein [Escherichia coli B], gi\|124500885\|gb\|EA... gi\|208819305, gi... - gi\|208819305\|ref\|ZP_03259625.1\| ATP-dependent chaperone ClpB [Escherichia coli O157:H7 str. EC4042],... gi\|209397795, gi... - gi\|209397795\|ref\|YP_002272065.1\| ATP-dependent chaperone ClpB [Escherichia coli O157:H7 str. EC4115]... gi\|209920069, gi... - gi\|209920069\|ref\|YP_002294153.1\| protein disaggregation chaperone [Escherichia coli SE11], gi\|209913... CLPB_ECOL6 - Chaperone protein ClpB OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=clpB PE=3 S...	0.0	[1..857]	[1..857]
gi\|187733901, gi... - gi\|75178201\|ref\|ZP_00698260.1\| COG0542: ATPases with chaperone activity, ATP-binding subunit [Shigel...	0.0	[1..857]	[1..857]
CLPB_SHIFL - Chaperone protein ClpB OS=Shigella flexneri GN=clpB PE=3 SV=1 gi\|110616085, gi... - gi\|110806537\|ref\|YP_690057.1\| protein disaggregation chaperone [Shigella flexneri 5 str. 8401], gi\|1... gi\|30063993, gi\|... - gi\|30063993\|ref\|NP_838164.1\| protein disaggregation chaperone [Shigella flexneri 2a str. 2457T], gi\|...	0.0	[1..857]	[1..857]
gi\|117624816, gi... - gi\|117624816\|ref\|YP_853729.1\| protein disaggregation chaperone [Escherichia coli APEC O1], gi\|115513... gi\|237706819, gi... - gi\|237706819\|ref\|ZP_04537300.1\| heat shock protein [Escherichia sp. 3_2_53FAA], gi\|226899859\|gb\|EEH8... gi\|91211926, gi\|... - gi\|91211926\|ref\|YP_541912.1\| protein disaggregation chaperone [Escherichia coli UTI89], gi\|91073500\|...	0.0	[1..857]	[5..861]

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Predicted Domain #1

Region A:
Residues: [1-857]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLDRLTNKF QLALADAQSL ALGHDNQFIE PLHLMSALLN QEGGSIRPLL TSAGINAGQL  60
   61 RTAIDQALSR LPQVEGTGGD VQPSSELVRV LNLCDKLAQK RGDNFISSEL FVLAALESRG 120
  121 TLTDLLKSAG ATTANITQAI EQMRGGESVN DQGAEDQRQA LKKYTVDLTE RAEQGKLDPV 180
  181 IGRDEEIRRT IQVLQRRTKN NPVLIGEPGV GKTAIVEGLA QRIINGEVPE GLKGRRVLAL 240
  241 DMGALVAGAK YRGEFEERLK GVLNDLAKQE GNVILFIDEL HTMVGAGKAD GAMDAGNMLK 300
  301 PALARGELHC VGATTLDEYR QYIEKDAALE RRFQKVFVAE PSVEDTIAIL RGLKERYELH 360
  361 HHVQITDPAI VAAATLSHRY IADRQLPDKA IDLIDEAASS IRMQIDSKPE ELDRLDRRII 420
  421 QLKLEQQALM KESDEASKKR LDMLNEELDD KERQYSELEE EWKAEKASLS GTQTIKAELE 480
  481 QAKIAIEQAR RVGDLARMSE LQYGKIPELE KQLEAATQSE GKTMRLLRNK VTDAEIAEVL 540
  541 ARWTGIPVSR MLEGEREKLL RMEQELHSRV IGQNEAVEAV SNAIRRSRAG LSDPNRPIGS 600
  601 FLFLGPTGVG KTELCKALAN FMFDSDDAMV RIDMSEFMEK HSVSRLVGAP PGYVGYEEGG 660
  661 YLTEAVRRRP YSVILLDEVE KAHPDVFNIL LQVLDDGRLT DGQGRTVDFR NTVVIMTSNL 720
  721 GSDLIQERFG ELDYGRMKEM VLGVVSQNFR PEFINRIDEV VVFHPLGEQH IASIAQIQLQ 780
  781 RLYKRLEERG YEIHISDEAL KLLSANGYDP VYGARPLKRA IQQQIENPLA QQILSGELVP 840
  841 GKVIRLEAND DRIVAVQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	176.0
Match:	1qvrA
Description:	Crystal Structure Analysis of ClpB
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits