YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|50119250, gi\|...
Organism:	Pectobacterium atrosepticum SCRI1043
Length:	190 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|50119250, gi|....

Description	E-value	Query Range	Subject Range
gi\|62181826, gi\|... - gi\|62181826\|ref\|YP_218243.1\| hypothetical protein SC3256 [Salmonella enterica subsp. enterica serova...	208.0	[0..1]	[181..8]
gi\|194403094, gi... - gi\|194444431\|ref\|YP_002042576.1\| lipopolysaccharide ABC transporter, periplasmic lipopolysaccharide-... gi\|194409253, gi... - gi\|194450949\|ref\|YP_002047347.1\| lipopolysaccharide transport periplasmic protein LptA [Salmonella e... gi\|168463456, gi... - gi\|195633360\|gb\|EDX51774.1\| lipopolysaccharide ABC transporter, periplasmic lipopolysaccharide-bindi... gi\|205343318, gi... - gi\|205343318\|gb\|EDZ30082.1\| lipopolysaccharide ABC transporter, periplasmic lipopolysaccharide-bindi... gi\|205337868, gi... - gi\|205337868\|gb\|EDZ24632.1\| lipopolysaccharide ABC transporter, periplasmic lipopolysaccharide-bindi... gi\|205348536, gi... - gi\|205348536\|gb\|EDZ35167.1\| lipopolysaccharide ABC transporter, periplasmic lipopolysaccharide-bindi... gi\|205333933, gi... - gi\|205333933\|gb\|EDZ20697.1\| lipopolysaccharide ABC transporter, periplasmic lipopolysaccharide-bindi... gi\|197289161, gi... - gi\|197289161\|gb\|EDY28530.1\| lipopolysaccharide ABC transporter, periplasmic lipopolysaccharide-bindi... gi\|167552032, gi... - gi\|205323170\|gb\|EDZ11009.1\| lipopolysaccharide ABC transporter, periplasmic lipopolysaccharide-bindi... gi\|167994511, gi... - gi\|205327638\|gb\|EDZ14402.1\| lipopolysaccharide ABC transporter, periplasmic lipopolysaccharide-bindi... gi\|213648389 - gi\|213648389\|ref\|ZP_03378442.1\| hypothetical protein SentesTy_14559 [Salmonella enterica subsp. ente... gi\|213855448 - gi\|213855448\|ref\|ZP_03383688.1\| hypothetical protein SentesT_15920 [Salmonella enterica subsp. enter... gi\|213426639 - gi\|213426639\|ref\|ZP_03359389.1\| hypothetical protein SentesTyphi_14118 [Salmonella enterica subsp. e... gi\|213622832 - gi\|213622832\|ref\|ZP_03375615.1\| hypothetical protein SentesTyp_37147 [Salmonella enterica subsp. ent... gi\|213053147 - gi\|213053147\|ref\|ZP_03346025.1\| hypothetical protein Salmoneentericaenterica_09610 [Salmonella enter... gi\|213419715 - gi\|213419715\|ref\|ZP_03352781.1\| hypothetical protein Salmonentericaenterica_18743 [Salmonella enteri... gi\|207858566, gi... - gi\|207858566\|ref\|YP_002245217.1\| lipopolysaccharide transport periplasmic protein LptA [Salmonella e... gi\|213021918 - gi\|213021918\|ref\|ZP_03336365.1\| hypothetical protein Salmonelentericaenterica_04022 [Salmonella ente... gi\|204319921, gi... - gi\|204931154\|ref\|ZP_03221948.1\| lipopolysaccharide ABC transporter, periplasmic lipopolysaccharide-b... gi\|205354219, gi... - gi\|205354219\|ref\|YP_002228020.1\| lipopolysaccharide transport periplasmic protein LptA [Salmonella e... gi\|198242711, gi... - gi\|198242711\|ref\|YP_002217289.1\| lipopolysaccharide ABC transporter, periplasmic lipopolysaccharide-... gi\|200388115, gi... - gi\|200388115\|ref\|ZP_03214727.1\| lipopolysaccharide ABC transporter, periplasmic lipopolysaccharide-b... gi\|197248482, gi... - gi\|197248482\|ref\|YP_002148243.1\| lipopolysaccharide ABC transporter, periplasmic lipopolysaccharide-... gi\|197262981, gi... - gi\|197262981\|ref\|ZP_03163055.1\| lipopolysaccharide ABC transporter, periplasmic lipopolysaccharide-b... gi\|194468742, gi... - gi\|194468742\|ref\|ZP_03074726.1\| lipopolysaccharide ABC transporter, periplasmic lipopolysaccharide-b... gi\|194737776, gi... - gi\|194737776\|ref\|YP_002116268.1\| lipopolysaccharide ABC transporter, periplasmic lipopolysaccharide-... lcl\|NC_016856.1_... - [gene=yhbN] [protein=hypothetical protein] [protein_id=YP_005239498.1] [location=3496972..3497526] gi\|214000953 - gi\|214000953\|ref\|ZP_03411688.1\| hypothetical protein Salmonellentericaenterica_10471 [Salmonella ent... gi\|16766613, gi\|... - gi\|16766613\|ref\|NP_462228.1\| hypothetical protein STM3318 [Salmonella typhimurium LT2], gi\|16421875\|...	207.0	[0..1]	[181..1]
gi\|26249786, gi\|... - gi\|26249786\|ref\|NP_755826.1\| hypothetical protein c3960 [Escherichia coli CFT073], gi\|26110214\|gb\|AA... gi\|110807066, gi... - gi\|110807066\|ref\|YP_690586.1\| hypothetical protein SFV_3230 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|24053674, gi\|... - ref\|NP_708999.1\| hypothetical protein SF3240 [Shigella flexneri 2a str. 301], gb\|AAN44706.1\| orf, c... gi\|91212625, gi\|... - gi\|91212625\|ref\|YP_542611.1\| hypothetical protein UTI89_C3636 [Escherichia coli UTI89], gi\|91074199\|...	203.0	[0..1]	[183..8]
gi\|208735274, gi... - gi\|208813997\|ref\|ZP_03255326.1\| lipopolysaccharide ABC transporter, periplasmic lipopolysaccharide-b... gi\|117625492, gi... - gi\|117625492\|ref\|YP_858815.1\| hypothetical protein APECO1_3235 [Escherichia coli APEC O1], gi\|115514... gi\|208808977, gi... - gi\|208808977\|ref\|ZP_03251314.1\| lipopolysaccharide ABC transporter, periplasmic lipopolysaccharide-b... gi\|124500503, gi... - gi\|124528480\|ref\|ZP_01699769.1\| OstA family protein [Escherichia coli B], gi\|124500503\|gb\|EAY47975.1... gi\|209396095, gi... - gi\|209396095\|ref\|YP_002272670.1\| lipopolysaccharide ABC transporter, periplasmic lipopolysaccharide-... gi\|208739356, gi... - gi\|208819233\|ref\|ZP_03259553.1\| lipopolysaccharide ABC transporter, periplasmic lipopolysaccharide-b... gi\|215266588, gi... - gi\|215488516\|ref\|YP_002330947.1\| lipopolysaccharide transport periplasmic protein LptA [Escherichia ... gi\|209920675, gi... - gi\|209920675\|ref\|YP_002294759.1\| lipopolysaccharide transport periplasmic protein LptA [Escherichia ... gi\|218555770, gi... - gi\|218555770\|ref\|YP_002388683.1\| lipopolysaccharide transport periplasmic protein LptA [Escherichia ... gi\|217319095, gi... - gi\|217326728\|ref\|ZP_03442811.1\| lipopolysaccharide ABC transporter, periplasmic lipopolysaccharide-b... gi\|189374133, gi... - gi\|189374133\|gb\|EDU92549.1\| lipopolysaccharide ABC transporter, periplasmic lipopolysaccharide-bindi... gi\|168781344, gi... - gi\|189001064\|gb\|EDU70050.1\| lipopolysaccharide ABC transporter, periplasmic lipopolysaccharide-bindi... gi\|169753478, gi... - gi\|170018550\|ref\|YP_001723504.1\| lipopolysaccharide transport periplasmic protein LptA [Escherichia ... gi\|168800914, gi... - gi\|189376819\|gb\|EDU95235.1\| lipopolysaccharide ABC transporter, periplasmic lipopolysaccharide-bindi... gi\|170520219, gi... - gi\|170682501\|ref\|YP_001745472.1\| lipopolysaccharide ABC transporter, periplasmic lipopolysaccharide-... gi\|170082734, gi... - gi\|170082734\|ref\|YP_001732054.1\| ABC transporter periplasmic-binding protein [Escherichia coli str. ... gi\|195940056 - gi\|195940056\|ref\|ZP_03085438.1\| hypothetical protein EscherichcoliO157_27295 [Escherichia coli O157:... gi\|194417256, gi... - gi\|194434477\|ref\|ZP_03066737.1\| lipopolysaccharide ABC transporter, periplasmic lipopolysaccharide-b... gi\|83585422, gi\|... - gi\|83585422\|ref\|ZP_00924068.1\| COG1934: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|13363552, gi\|... - gi\|15833333\|ref\|NP_312106.1\| lipopolysaccharide transport periplasmic protein LptA [Escherichia coli... gi\|110643441, gi... - gi\|110643441\|ref\|YP_671171.1\| lipopolysaccharide transport periplasmic protein LptA [Escherichia col... gi\|218691490, gi... - gi\|218691490\|ref\|YP_002399702.1\| lipopolysaccharide transport periplasmic protein LptA [Escherichia ... gi\|218560270, gi... - gi\|218560270\|ref\|YP_002393183.1\| lipopolysaccharide transport periplasmic protein LptA [Escherichia ... gi\|218701969, gi... - gi\|218701969\|ref\|YP_002409598.1\| lipopolysaccharide transport periplasmic protein LptA [Escherichia ... gi\|218696905, gi... - gi\|218696905\|ref\|YP_002404572.1\| lipopolysaccharide transport periplasmic protein LptA [Escherichia ... gi\|218433917, gi... - gi\|218706820\|ref\|YP_002414339.1\| lipopolysaccharide transport periplasmic protein LptA [Escherichia ... LPTA_ECOL6 - Lipopolysaccharide export system protein LptA OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928... gi\|188014365, gi... - gi\|188014365\|gb\|EDU52487.1\| lipopolysaccharide ABC transporter, periplasmic lipopolysaccharide-bindi... YHBN_ECOLI - Protein yhbN precursor - Escherichia coli gi\|168763737, gi... - gi\|189366148\|gb\|EDU84564.1\| lipopolysaccharide ABC transporter, periplasmic lipopolysaccharide-bindi... gi\|168754182, gi... - gi\|189358723\|gb\|EDU77142.1\| lipopolysaccharide ABC transporter, periplasmic lipopolysaccharide-bindi... gi\|187767477, gi... - gi\|187767477\|gb\|EDU31321.1\| lipopolysaccharide ABC transporter, periplasmic lipopolysaccharide-bindi... gi\|189361851, gi... - gi\|189361851\|gb\|EDU80270.1\| lipopolysaccharide ABC transporter, periplasmic lipopolysaccharide-bindi... gi\|551336, gi\|89... - gi\|89109963\|ref\|AP_003743.1\| predicted transporter subunit [Escherichia coli str. K-12 substr. W3110... gi\|56480284, gi\|... - gi\|56480284\|ref\|NP_708999.2\| hypothetical protein SF3240 [Shigella flexneri 2a str. 301], gi\|5638383... gi\|81242662, gi\|... - gi\|82778514\|ref\|YP_404863.1\| hypothetical protein SDY_3381 [Shigella dysenteriae Sd197], gi\|81242662... gi\|81246973, gi\|... - gi\|82545562\|ref\|YP_409509.1\| hypothetical protein SBO_3182 [Shigella boydii Sb227], gi\|81246973\|gb\|A... gi\|190901334, gi... - gi\|75228161\|ref\|ZP_00714826.1\| COG1934: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|75236219, gi\|... - gi\|75236219\|ref\|ZP_00720329.1\| COG1934: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|75197149, gi\|... - gi\|75197149\|ref\|ZP_00707219.1\| COG1934: Uncharacterized protein conserved in bacteria [Escherichia c... YHBN_ECOL6, LPTA... - Protein yhbN OS=Escherichia coli O6 GN=yhbN PE=3 SV=1, Lipopolysaccharide export system protein lptA... gi\|75209643, gi\|... - gi\|75209643\|ref\|ZP_00709855.1\| COG1934: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|188489140, gi... - gi\|75511897\|ref\|ZP_00734509.1\| COG1934: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|74313737, gi\|... - gi\|74313737\|ref\|YP_312156.1\| hypothetical protein SSON_3348 [Shigella sonnei Ss046], gi\|73857214\|gb\|... gi\|192956386, gi... - gi\|75234886\|ref\|ZP_00719177.1\| COG1934: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|193065329, gi... - gi\|75256576\|ref\|ZP_00728206.1\| COG1934: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|75176108, gi\|... - gi\|75176108\|ref\|ZP_00696276.1\| COG1934: Uncharacterized protein conserved in bacteria [Shigella boyd... gi\|157156158, gi... - gi\|75188006\|ref\|ZP_00701273.1\| COG1934: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|30042797, gi\|... - gi\|30064538\|ref\|NP_838709.1\| hypothetical protein S3458 [Shigella flexneri 2a str. 2457T], gi\|300427... LPTA_SHIFL - Lipopolysaccharide export system protein LptA OS=Shigella flexneri GN=lptA PE=3 SV=1 EG12618 - lipopolysaccharide export ABC transporter periplasmic binding protein; Lipid A binding protein; LPS ... gi\|227835317, gi... - gi\|227887921\|ref\|ZP_04005726.1\| lipopolysaccharide ABC superfamily ATP binding cassette transporter,... LPTA_ECO57 - Lipopolysaccharide export system protein LptA OS=Escherichia coli O157:H7 GN=lptA PE=3 SV=1 gi\|237706048, gi... - gi\|237706048\|ref\|ZP_04536529.1\| yhbN [Escherichia sp. 3_2_53FAA], gi\|226899088\|gb\|EEH85347.1\| yhbN [... gi\|238902302, gi... - gi\|238902302\|ref\|YP_002928098.1\| putative transporter subunit: periplasmic-binding component of ABC ... gi\|12517818, gi\|... - gi\|15803740\|ref\|NP_289774.1\| hypothetical protein Z4563 [Escherichia coli O157:H7 EDL933], gi\|125178... gi\|226839989, gi... - gi\|254038365\|ref\|ZP_04872423.1\| yhbN [Escherichia sp. 1_1_43], gi\|226839989\|gb\|EEH72010.1\| yhbN [Esc... gi\|254594549, gi... - gi\|254795149\|ref\|YP_003079986.1\| predicted transporter subunit: periplasmic-binding component of ABC... EG12618 - lipopolysaccharide export ABC transporter periplasmic binding protein; Lipid A binding protein; LPS ...	201.0	[0..1]	[183..1]
gi\|16762080 - gi\|16762080\|ref\|NP_457697.1\| hypothetical protein STY3497 [Salmonella enterica subsp. enterica serov... gi\|56415247, gi\|... - gi\|56415247\|ref\|YP_152322.1\| lipopolysaccharide transport periplasmic protein LptA [Salmonella enter... gi\|25352006, gi\|... - gi\|25352006\|pir\|\|AE0905 conserved hypothetical protein STY3497 [imported] - Salmonella enterica subs... gi\|29143569, gi\|... - gi\|29143569\|ref\|NP_806911.1\| hypothetical protein t3235 [Salmonella enterica subsp. enterica serovar... gi\|224585115, gi... - gi\|224585115\|ref\|YP_002638914.1\| hypothetical protein SPC_3388 [Salmonella enterica subsp. enterica ... gi\|161365692, gi... - gi\|161616328\|ref\|YP_001590293.1\| hypothetical protein SPAB_04136 [Salmonella enterica subsp. enteric...	193.0	[0..13]	[181..1]
gi\|77978704 - gi\|77978704\|ref\|ZP_00834129.1\| COG1934: Uncharacterized protein conserved in bacteria [Yersinia inte...	182.0	[0..1]	[183..1]
gi\|59710996, gi\|... - gi\|59710996\|ref\|YP_203772.1\| ABC transporter periplasmic-binding protein [Vibrio fischeri ES114], gi...	174.0	[0..8]	[172..1]
gi\|90413001, gi\|... - gi\|90413001\|ref\|ZP_01220999.1\| hypothetical protein yhbN precursor [Photobacterium profundum 3TCK], ...	174.0	[0..8]	[174..1]
gi\|46914782, gi\|... - gi\|54310341\|ref\|YP_131361.1\| hypotetical protein yhbN precursor [Photobacterium profundum SS9], gi\|4...	174.0	[0..8]	[172..1]
gi\|52307822, gi\|... - gi\|52425770\|ref\|YP_088907.1\| hypothetical protein MS1715 [Mannheimia succiniciproducens MBEL55E], gi...	173.0	[0..1]	[174..1]

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Predicted Domain #1

Region A:
Residues: [1-190]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSKTNNLMR NTLIASSLFA VSISTFAVTG DSNQPIHIDS AQQSLDMQGN TVTFTGNVVV  60
   61 KQGTIEVKAD KVVVTRPQGG QGSEVVEGYG NPVTFYQMQD NGKPVKGHAQ KIRYELATDF 120
  121 LVLTGNAYLE QQDSNVKGDR ITYLVKQQQM EATSDKGKRV TTVLVPSQLQ DKENKSQPSR 180
  181 SQQPQPRVTE

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	52.022276
Match:	PF03968.5
Description:	No description for PF03968.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits