YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30263473, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	188 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30263473, gi|....

Description	E-value	Query Range	Subject Range
gi\|86167778, gi\|... - gi\|87124206\|ref\|ZP_01080055.1\| UDP-N-acetylglucosamine pyrophosphorylase [Synechococcus sp. RS9917],...	7.0E-33	[3..178]	[268..451]
gi\|37680729, gi\|... - gi\|37680729\|ref\|NP_935338.1\| UDP-N-acetylglucosamine acyltransferase [Vibrio vulnificus YJ016], gi\|3...	7.0E-32	[4..188]	[13..228]
gi\|85696652, gi\|... - gi\|85716463\|ref\|ZP_01047434.1\| UDP-N-acetylglucosamine pyrophosphorylase [Nitrobacter sp. Nb-311A], ...	1.0E-31	[3..187]	[274..450]
GLMU_SILPO - Bifunctional protein glmU OS=Silicibacter pomeroyi GN=glmU PE=3 SV=1 GLMU_RUEPO - Bifunctional protein GlmU OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) GN=glmU PE=3...	1.0E-31	[3..187]	[264..446]
LPXA_VIBVY - Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase OS=Vibrio vulnificus (strain ... LPXA_VIBVU - Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase OS=Vibrio vulnificus GN=lpxA ... LPXA_VIBVU - Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase OS=Vibrio vulnificus (strain ...	2.0E-31	[4..188]	[6..221]
GLMU_NITWN - Bifunctional protein GlmU OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=glmU PE=3 SV=1	2.0E-31	[3..188]	[274..451]
gi\|116074575, gi... - gi\|116074575\|ref\|ZP_01471836.1\| UDP-N-acetylglucosamine pyrophosphorylase [Synechococcus sp. RS9916]...	2.0E-31	[3..172]	[268..445]
GLMU_SYNE7 - Bifunctional protein GlmU OS=Synechococcus elongatus (strain PCC 7942) GN=glmU PE=3 SV=1 GLMU_SYNP6 - Bifunctional protein GlmU OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=glmU ...	3.0E-31	[3..178]	[268..451]
gi\|82411382, gi\|... - gi\|82703317\|ref\|YP_412883.1\| acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase ...	4.0E-31	[1..187]	[1..218]
GLMU_NITHX - Bifunctional protein GlmU OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=glmU PE=3 SV=1	5.0E-31	[3..188]	[274..451]

Back

Predicted Domain #1

Region A:
Residues: [1-188]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSFYSQEEL KKIGFLSVGK NVLISKKASI YNPGVISVGN NVRIDDFCIL SGKVTIGSYS  60
   61 HIAAYTALYG GEVGIEMYDF ANISSRTIVY AAIDDFSGNA LMGPTIPNQY KNVKTGKVIL 120
  121 KKHVIIGAHS IIFPNVVIGE GVAVGAMSMV KESLDDWYIY VGVPVRKIKA RKRKIVELEN 180
  181 EFLKSMNS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.0
Match:	1hv9A
Description:	N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain; N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase activity	2.79715234898059	bayes_pls_golite062009
acyltransferase activity	2.64458400880191	bayes_pls_golite062009
transferase activity, transferring acyl groups other than amino-acyl groups	2.61026404734033	bayes_pls_golite062009
catalytic activity	2.59855937987599	bayes_pls_golite062009
transferase activity, transferring acyl groups	2.47920127314651	bayes_pls_golite062009
transferase activity	1.3237300007392	bayes_pls_golite062009
O-acyltransferase activity	0.93865496557523	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: