YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30257564, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	500 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30257564, gi|....

Description	E-value	Query Range	Subject Range
MQO_BACCN - Probable malate:quinone oxidoreductase OS=Bacillus cytotoxicus (strain DSM 22905 / CIP 110041 / 391-...	0.0	[1..500]	[1..500]
MQO_BACWK - Probable malate:quinone oxidoreductase OS=Bacillus weihenstephanensis (strain KBAB4) GN=mqo PE=3 SV=...	0.0	[1..500]	[1..500]
MQO_OCEIH - Probable malate:quinone oxidoreductase OS=Oceanobacillus iheyensis (strain DSM 14371 / JCM 11309 / K... MQO_OCEIH - Probable malate:quinone oxidoreductase OS=Oceanobacillus iheyensis GN=mqo PE=3 SV=1	0.0	[1..497]	[1..497]
MQO_BACHD - Probable malate:quinone oxidoreductase OS=Bacillus halodurans GN=mqo PE=3 SV=1 MQO_BACHD - Probable malate:quinone oxidoreductase OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FER...	0.0	[1..500]	[1..500]
gi\|70729795, gi\|... - gi\|70729795\|ref\|YP_259534.1\| malate:quinone oxidoreductase [Pseudomonas fluorescens Pf-5], gi\|683440...	0.0	[2..498]	[23..521]
gi\|104783038, gi... - gi\|95112025\|emb\|CAK16752.1\| malate dehydrogenase, FAD/NAD(P)-binding domain [Pseudomonas entomophila... gi\|95112025 - gi\|95112025\|emb\|CAK16752.1\| malate dehydrogenase, FAD/NAD(P)-binding domain [Pseudomonas entomophila...	0.0	[2..498]	[23..521]
MQO2_PSEPK - Probable malate:quinone oxidoreductase 2 OS=Pseudomonas putida (strain KT2440) GN=mqo2 PE=3 SV=1	2.0E-99	[2..498]	[5..503]
MQO_BURCH - Probable malate:quinone oxidoreductase OS=Burkholderia cenocepacia (strain HI2424) GN=mqo PE=3 SV=2 MQO_BURCA - Probable malate:quinone oxidoreductase OS=Burkholderia cenocepacia (strain AU 1054) GN=mqo PE=3 SV=1	2.0E-99	[2..498]	[29..528]
MQO_BURL3 - Probable malate:quinone oxidoreductase OS=Burkholderia lata (strain ATCC 17760 / LMG 22485 / NCIMB 9... MQO_BURS3 - Probable malate:quinone oxidoreductase OS=Burkholderia sp. (strain 383) GN=mqo PE=3 SV=1	2.0E-99	[2..498]	[29..528]
gi\|148510580, gi... - gi\|82735903\|ref\|ZP_00898764.1\| Malate:quinone-oxidoreductase [Pseudomonas putida F1], gi\|82716890\|gb...	3.0E-99	[2..498]	[23..521]

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Predicted Domain #1

Region A:
Residues: [1-500]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNMQQKTDV ILIGAGIMSA TLGSLLKELA PEWEIKVFEK LASAGEESSN EWNNAGTGHS  60
   61 ALCELNYTSE KSDGSIDISK AVKVNEQFQL SRQFWAYLVK SKLIRNPQDF IMPLPHMSLV 120
  121 QGEKNVEFLK NRFEALSKNP LFQGMEFSDA PETLKKWLPL IMEGRTSNEP MAATKIDSGT 180
  181 DVNFGALTRM LFDYLKTKDV ELNYKHSVEN IKRTKNGLWE VKVHDMNSGK IEHHTAKFVF 240
  241 IGGGGGSLPL LQKTGIPESK HIGGFPVSGL FMVCKNQKVV EQHHAKVYGK AKVGAPPMSV 300
  301 PHLDTRYIDN KKALLFGPFA GFSPKFLKTG SNLDLIGSVK PNNVLTMLAA GVKEMGLTKY 360
  361 LIQQVMLSHE KRMEELREFI PNAKSEDWDI VVAGQRVQVI KDTDAGGKGT LQFGTEVVSA 420
  421 ADGSIAALLG ASPGASTAVH VMLEVLEKCF PSRMVEWEGK IKEMIPSYGI SLTENPRLFQ 480
  481 DLHTSTGRTL GLNEKETVHN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.39794
Match:	1pj5A
Description:	Crystal structure of dimethylglycine oxidase of Arthrobacter globiformis in complex with acetate
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
oxidoreductase activity	2.24619008578137	bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH	1.65000128703365	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors, NAD or NADP as acceptor	1.63042178480709	bayes_pls_golite062009
catalytic activity	1.40171956669527	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors	1.09945070982191	bayes_pls_golite062009
dihydrolipoyl dehydrogenase activity	0.5230628272236	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: