YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30259645, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	403 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30259645, gi|....

Description	E-value	Query Range	Subject Range
gi\|56381330, gi\|... - gi\|56421488\|ref\|YP_148806.1\| NADH dehydrogenase [Geobacillus kaustophilus HTA426], gi\|56381330\|dbj\|B...	1.0E-71	[2..403]	[1..404]
gi\|89100537, gi\|... - gi\|89100537\|ref\|ZP_01173397.1\| NADH dehydrogenase [Bacillus sp. NRRL B-14911], gi\|89084724\|gb\|EAR638...	5.0E-69	[2..403]	[1..405]
gi\|145903140, gi... - gi\|52787087\|ref\|YP_092916.1\| YumB [Bacillus licheniformis ATCC 14580], gi\|52349589\|gb\|AAU42223.1\| Yu...	6.0E-69	[2..403]	[1..403]
gi\|56964688, gi\|... - gi\|56964688\|ref\|YP_176419.1\| NADH dehydrogenase [Bacillus clausii KSM-K16], gi\|56910931\|dbj\|BAD65458...	2.0E-67	[2..402]	[1..400]
gi\|10176030, gi\|... - gi\|15615969\|ref\|NP_244273.1\| NADH dehydrogenase [Bacillus halodurans C-125], gi\|10176030\|dbj\|BAB0712... gi\|25285264 - pir\|\|G84075 NADH dehydrogenase BH3407 [imported] - Bacillus halodurans (strain C-125)	2.0E-66	[2..399]	[1..397]
gi\|39574484, gi\|... - gi\|42521954\|ref\|NP_967334.1\| NADH dehydrogenase [Bdellovibrio bacteriovorus HD100], gi\|39574484\|emb\|...	4.0E-66	[3..403]	[7..406]
gi\|113475715, gi... - gi\|71674358\|ref\|ZP_00672105.1\| FAD-dependent pyridine nucleotide-disulphide oxidoreductase [Trichode...	6.0E-65	[4..403]	[15..419]
gi\|45602582, gi\|... - gi\|45655611\|ref\|YP_003420.1\| NADH dehydrogenase [Leptospira interrogans serovar Copenhageni str. Fio...	7.0E-65	[2..402]	[4..403]
gi\|24217097, gi\|... - gi\|24217097\|ref\|NP_714580.1\| NADH dehydrogenase [Leptospira interrogans serovar Lai str. 56601], gi\|...	8.0E-65	[4..402]	[6..403]
gi\|116122479, gi... - gi\|116329586\|ref\|YP_799305.1\| NADH dehydrogenase [Leptospira borgpetersenii serovar Hardjo-bovis L55... gi\|116127342, gi... - gi\|116332475\|ref\|YP_802192.1\| NADH dehydrogenase [Leptospira borgpetersenii serovar Hardjo-bovis JB1...	1.0E-64	[2..402]	[4..403]

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Predicted Domain #1

Region A:
Residues: [1-403]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKTPKIVVL GAGYGGMITT VRLQKALSVN EAEITLVNNN SYHYQATWLH ESAAGTLQDE  60
   61 KICLDIQDVI DTNKVNFVQD TVVEIKAAEK RIILKDGELE YDYLVIGLGF ESETFGITGL 120
  121 KEHAFSIANI NATRQIREHM EASFAKYATE KRDELVTIVV GGAGFTGIEY VGELANRVPE 180
  181 LCKEYNVPRE KARIICVEAA PTALPGFDPA LVEYAVKQLE KKGVEFRIGT AIKEATEEGI 240
  241 IVANGDDTEL IKSETVVWAA GVRGNGIVEE SGFEAMRGRV KVDEYMHAPG YEDVFMVGDA 300
  301 ALIINEEINR PYPPTAQIAI QQGYNIAHNL TVLVRGKGEM KKFVFDNKGS VCSLGHDDAM 360
  361 GVVMGKKLTG WKASFMKKVI DNRYLFLLGG PLLVLKKGKL KFF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	54.0
Match:	1lpfA
Description:	Dihydrolipoamide dehydrogenase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.93817882455555	bayes_pls_golite062009
oxidoreductase activity	1.23684145725292	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: