YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30265303, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	132 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30265303, gi|....

Description	E-value	Query Range	Subject Range
gi\|42784450, gi\|... - gi\|42784450\|ref\|NP_981697.1\| stage III sporulation protein D [Bacillus cereus ATCC 10987], gi\|427403...	232.0	[0..1]	[132..1]
gi\|74488738, gi\|... - gi\|75763772\|ref\|ZP_00743436.1\| Stage III sporulation protein D [Bacillus thuringiensis serovar israe...	230.0	[0..1]	[132..1]
gi\|225787848, gi... - gi\|225867257\|ref\|YP_002752635.1\| stage III sporulation protein D [Bacillus cereus 03BB102], gi\|22578... gi\|118480324, gi... - gi\|118480324\|ref\|YP_897475.1\| stage III sporulation protein D [Bacillus thuringiensis str. Al Hakam]... gi\|52140285, gi\|... - gi\|52140285\|ref\|YP_086544.1\| stage III sporulation protein D [Bacillus cereus E33L], gi\|51973754\|gb\|...	227.0	[0..1]	[132..1]
gi\|89154421, gi\|... - gi\|89207681\|ref\|ZP_01186217.1\| stage III sporulation protein D [Bacillus weihenstephanensis KBAB4], ...	220.0	[0..1]	[132..1]
gi\|89149294, gi\|... - gi\|89202651\|ref\|ZP_01181365.1\| spoIIID; stage III sporulation protein D [Bacillus cereus subsp. cyto...	211.0	[0..1]	[132..1]
gi\|65317254 - gi\|65317254\|ref\|ZP_00390213.1\| hypothetical protein Bant_01000398 [Bacillus anthracis str. A2012] gi\|47569382, gi\|... - gi\|47569382\|ref\|ZP_00240065.1\| stage III sporulation protein D [Bacillus cereus G9241], gi\|47553970\|...	211.0	[0..10]	[132..1]
gi\|254724294 - gi\|254724294\|ref\|ZP_05186078.1\| stage III sporulation protein D [Bacillus anthracis str. A1055] gi\|254686299 - gi\|254686299\|ref\|ZP_05150158.1\| stage III sporulation protein D [Bacillus anthracis str. CNEVA-9066] gi\|254744410 - gi\|254744410\|ref\|ZP_05202090.1\| stage III sporulation protein D [Bacillus anthracis str. Kruger B] gi\|254735206 - gi\|254735206\|ref\|ZP_05192915.1\| stage III sporulation protein D [Bacillus anthracis str. Western Nor... gi\|254759553 - gi\|254759553\|ref\|ZP_05211578.1\| stage III sporulation protein D [Bacillus anthracis str. Australia 9... gi\|254755714 - gi\|254755714\|ref\|ZP_05207747.1\| stage III sporulation protein D [Bacillus anthracis str. Vollum] gi\|29898875, gi\|... - gi\|30023314\|ref\|NP_834945.1\| stage III sporulation protein D [Bacillus cereus ATCC 14579], gi\|298988... gi\|21397749 - ref\|NP_653734.1\| hypothetical protein BA_0374 [Bacillus anthracis str. A2012] gi\|540483 - gi\|540483\|dbj\|BAA05697.1\| Bt SpoIIID [Bacillus thuringiensis]	150.0	[0..43]	[132..1]
gi\|221320839 - gi\|221320839\|ref\|ZP_03602133.1\| transcriptional regulator [Bacillus subtilis subsp. subtilis str. JH... gi\|221315926 - gi\|221315926\|ref\|ZP_03597731.1\| transcriptional regulator [Bacillus subtilis subsp. subtilis str. NC... SP3D_BACSU - Stage III sporulation protein D OS=Bacillus subtilis (strain 168) GN=spoIIID PE=1 SV=1 gi\|221325124 - gi\|221325124\|ref\|ZP_03606418.1\| transcriptional regulator [Bacillus subtilis subsp. subtilis str. SM... SP3D_BACSU - Stage III sporulation protein D OS=Bacillus subtilis GN=spoIIID PE=1 SV=1	147.0	[0..43]	[132..1]
gi\|89095661, gi\|... - gi\|89095661\|ref\|ZP_01168555.1\| transcriptional regulator [Bacillus sp. NRRL B-14911], gi\|89089407\|gb...	144.0	[0..43]	[131..1]

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Predicted Domain #1

Region A:
Residues: [1-132]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNHFIINPRM FNAYKQHSHL LLSRMQRGSF HTSHIQFREA SGVHDYIKER TIKIGKYIVE  60
   61 TRKTVRVIAK EFGVSKSTVH KDLTERLPEI NPELANEVKE ILDYHKSIRH LRGGEATKQK 120
  121 YRKEDVEKPV RQ

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.67
Match:	2o20A
Description:	No description for 2o20A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits