YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30261436, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	564 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30261436, gi|....

Description	E-value	Query Range	Subject Range
gi\|30065219, gi\|... - gi\|30065219\|ref\|NP_839390.1\| oligopeptidase A [Shigella flexneri 2a str. 2457T], gi\|30043481\|gb\|AAP1... gi\|110616881, gi... - gi\|110807333\|ref\|YP_690853.1\| oligopeptidase A [Shigella flexneri 5 str. 8401], gi\|110616881\|gb\|ABF0... gi\|56383906, gi\|... - gi\|56480355\|ref\|NP_709278.2\| oligopeptidase A [Shigella flexneri 2a str. 301], gi\|56383906\|gb\|AAN449...	0.0	[3..548]	[76..676]
gi\|26250119, gi\|... - gi\|26250119\|ref\|NP_756159.1\| oligopeptidase A [Escherichia coli CFT073], gi\|26110548\|gb\|AAN82733.1\|A...	0.0	[3..548]	[89..689]
gi\|91212991, gi\|... - gi\|91212991\|ref\|YP_542977.1\| oligopeptidase A [Escherichia coli UTI89], gi\|91074565\|gb\|ABE09446.1\| o...	0.0	[3..548]	[89..689]
gi\|74314095, gi\|... - gi\|74314095\|ref\|YP_312514.1\| oligopeptidase A [Shigella sonnei Ss046], gi\|73857572\|gb\|AAZ90279.1\| ol...	0.0	[3..548]	[76..676]
gi\|124528584, gi... - gi\|124528584\|ref\|ZP_01699862.1\| Oligopeptidase A [Escherichia coli B], gi\|124500425\|gb\|EAY47898.1\| O... EG11441 - oligopeptidase A / Oligopeptidase A, zinc metalloprotease; involved in the degradation of cleaved si... EG11441 - oligopeptidase A / Oligopeptidase A, zinc metalloprotease; involved in the degradation of cleaved si... gi\|238902587, gi... - gi\|238902587\|ref\|YP_002928383.1\| oligopeptidase A [Escherichia coli BW2952], gi\|238861932\|gb\|ACR6393... gi\|226839176, gi... - gi\|254038670\|ref\|ZP_04872726.1\| oligopeptidase A [Escherichia sp. 1_1_43], gi\|226839176\|gb\|EEH71199.... gi\|89110515, gi\|... - gi\|89110515\|ref\|AP_004295.1\| oligopeptidase A [Escherichia coli str. K-12 substr. W3110], gi\|8567654... gi\|170018272, gi... - gi\|170018272\|ref\|YP_001723226.1\| oligopeptidase A [Escherichia coli ATCC 8739], gi\|169753200\|gb\|ACA7... gi\|75516039, gi\|... - gi\|75516039\|ref\|ZP_00738157.1\| COG0339: Zn-dependent oligopeptidases [Escherichia coli 53638], gi\|18... gi\|75260213, gi\|... - gi\|75260213\|ref\|ZP_00731481.1\| COG0339: Zn-dependent oligopeptidases [Escherichia coli E22], gi\|1930... gi\|170684269, gi... - gi\|170684269\|ref\|YP_001745753.1\| oligopeptidase A [Escherichia coli SMS-3-5], gi\|170521987\|gb\|ACB201... gi\|194414962, gi... - gi\|75211865\|ref\|ZP_00711929.1\| COG0339: Zn-dependent oligopeptidases [Escherichia coli B171], gi\|194... gi\|170083009, gi... - gi\|170083009\|ref\|YP_001732329.1\| oligopeptidase A [Escherichia coli str. K-12 substr. DH10B], gi\|169... OPDA_ECOLI - Oligopeptidase A (EC 3.4.24.70) - Escherichia coli gi\|157162974, gi... - gi\|75197419\|ref\|ZP_00707489.1\| COG0339: Zn-dependent oligopeptidases [Escherichia coli HS], gi\|15716... gi\|218702251, gi... - gi\|218702251\|ref\|YP_002409880.1\| oligopeptidase A [Escherichia coli IAI39], gi\|218372237\|emb\|CAR2009... gi\|209914213, gi... - gi\|209920954\|ref\|YP_002295038.1\| oligopeptidase A [Escherichia coli SE11], gi\|209914213\|dbj\|BAG79287...	0.0	[3..548]	[76..676]
gi\|226902514, gi... - gi\|237703250\|ref\|ZP_04533731.1\| oligopeptidase A [Escherichia sp. 3_2_53FAA], gi\|226902514\|gb\|EEH887... gi\|215488770, gi... - gi\|215488770\|ref\|YP_002331201.1\| oligopeptidase A [Escherichia coli O127:H6 str. E2348/69], gi\|21526... gi\|218367336, gi... - gi\|218560567\|ref\|YP_002393480.1\| oligopeptidase A [Escherichia coli S88], gi\|218367336\|emb\|CAR05114.... gi\|218429341, gi... - gi\|218691777\|ref\|YP_002399989.1\| oligopeptidase A [Escherichia coli ED1a], gi\|218429341\|emb\|CAR10155... gi\|117625776, gi... - gi\|117625776\|ref\|YP_859099.1\| oligopeptidase A [Escherichia coli APEC O1], gi\|115514900\|gb\|ABJ02975....	0.0	[3..548]	[76..676]
gi\|187730439, gi... - gi\|75179940\|ref\|ZP_00699927.1\| COG0339: Zn-dependent oligopeptidases [Shigella boydii BS512], gi\|187...	0.0	[3..548]	[76..676]
gi\|75242711, gi\|... - gi\|75242711\|ref\|ZP_00726455.1\| COG0339: Zn-dependent oligopeptidases [Escherichia coli F11], gi\|1911... gi\|110643735, gi... - gi\|110643735\|ref\|YP_671465.1\| oligopeptidase A [Escherichia coli 536], gi\|110345327\|gb\|ABG71564.1\| o...	0.0	[3..548]	[76..676]
gi\|197095904, gi... - gi\|197364427\|ref\|YP_002144064.1\| oligopeptidase A [Salmonella enterica subsp. enterica serovar Parat... gi\|56415499, gi\|... - gi\|56415499\|ref\|YP_152574.1\| oligopeptidase A [Salmonella enterica subsp. enterica serovar Paratyphi...	0.0	[3..548]	[76..676]
gi\|157159202, gi... - gi\|75188265\|ref\|ZP_00701532.1\| COG0339: Zn-dependent oligopeptidases [Escherichia coli E24377A], gi\|...	0.0	[3..548]	[76..676]

Back

Predicted Domain #1

Region A:
Residues: [1-564]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFKDYEYKR PNIEELKEKF TVALEKFDNA KTVEEQKQVI HSINEIRNDF GTMGNLCYIR  60
   61 HSVDTTDAFY KEEQDFFDEF SPVVQGYGTK YYNALIHSPF REELEAYYGK QLFALAECDL 120
  121 KTYSDEVVKD LQLENKLSSQ YTQLLASAKI DFAGEERTLS QLIPFMQGKE RSERKAASEA 180
  181 YYGFLAENEE ELDRIYDELV KVRTKIAKSL GFKNFVELGY ARMYRTDYNA EMVANYRQQV 240
  241 LDYIVPVTTE LRKRQQARIG VEKLAYYDEN FEFPTGNPTP KGDADWIVNH GKTMYKELSA 300
  301 ETDEFFNFML DNDLLDLVAK KGKAGGGYCT YIENYKAPFI FSNFNGTSGD IDVLTHEAGH 360
  361 AFQVYESRKF EIPEYNWPTY EACEIHSMSM EFFTWPWMKL FFEEDADKYY FSHLSSALLF 420
  421 LPYGVSVDEY QHYVYENPEA SPEERKTAWR NIEKKYLPHR DYEDNDYLER GGFWQRQGHI 480
  481 YSSPFYYIDY TLAQICALQF WKRARDNRQE AWEDYVNLCQ QGGSKSFLEL VEVANLTSPF 540
  541 AEGCVKSVIT EIEAWLHAID DTKL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	101.0
Match:	2h1jA
Description:	No description for 2h1jA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits