YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30258551, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	308 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30258551, gi|....

Description	E-value	Query Range	Subject Range
gi\|51975053, gi\|... - gi\|52141584\|ref\|YP_085246.1\| sporulation sigma-E factor processing peptidase (stage II sporulation p...	0.0	[1..308]	[12..319]
gi\|42738925, gi\|... - gi\|42782998\|ref\|NP_980245.1\| sporulation sigma-E factor processing peptidase [Bacillus cereus ATCC 1...	0.0	[1..308]	[1..308]
gi\|25527253 - gi\|25527253\|gb\|AAN04562.1\| sporulation sigma-E factor processing peptidase [Bacillus mycoides]	0.0	[1..308]	[12..319]
gi\|218899059, gi... - gi\|218899059\|ref\|YP_002447470.1\| sporulation sigma-E factor processing peptidase [Bacillus cereus G9... gi\|29897550, gi\|... - gi\|30021994\|ref\|NP_833625.1\| sporulation sigma-E factor processing peptidase [Bacillus cereus ATCC 1...	0.0	[4..308]	[1..305]
gi\|47570746, gi\|... - gi\|47570746\|ref\|ZP_00241325.1\| sporulation factor SpoIIGA [Bacillus cereus G9241], gi\|47552585\|gb\|EA...	0.0	[1..283]	[14..296]
gi\|2736083 - gi\|2736083\|gb\|AAB94055.1\| sporulation specific protein; SpoIIGA [Bacillus megaterium]	0.0	[4..301]	[1..299]
gi\|25494412 - pir\|\|E83969 proteinase (processing of pro-sigma-E to active sigma-E) spoIIGA [imported] - Bacillus h... gi\|10175177, gi\|... - gi\|15615120\|ref\|NP_243423.1\| protease (processing of pro-sigma-E to active sigma-E) [Bacillus halodu...	0.0	[4..301]	[1..297]
SP2G_BACSU - Sporulation sigma-E factor-processing peptidase OS=Bacillus subtilis (strain 168) GN=spoIIGA PE=1 SV... SP2G_BACSU - Sporulation sigma-E factor-processing peptidase OS=Bacillus subtilis GN=spoIIGA PE=3 SV=1	9.0E-96	[4..300]	[1..300]
gi\|52348010, gi\|... - gi\|52785508\|ref\|YP_091337.1\| SpoIIGA [Bacillus licheniformis ATCC 14580], gi\|52348010\|gb\|AAU40644.1\|...	3.0E-93	[4..300]	[1..300]

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Predicted Domain #1

Region A:
Residues: [1-174]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNCLVVYADV VWLLNACIDF LLLLLTATVL KKKIKRWRLV LGAFIGSTIV IFAFTPFASM  60
   61 MTHPIMKLLY SLLIVYTAFG FTTFRNYTQT VFTFYFVTFM VGGGLMGTHF FLQTNEMVNG 120
  121 LVQSQSISYG DPISWLFVIF GFPVIYYFSK KRIESVEVTK IHYDQIVKLK IQLA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [175-308]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EEELELAGLI DSGNQLYDPL TKTPVMIMHI SSLEHCLPAW LTEQIYSKTE IPQIPENDSG  60
   61 WATKLRLIPF RAVGVENQFL WAIKPESVQI YHEGSSIVVN KVLIGLNTQQ LSTNGEYQCI 120
  121 VHPKMLISQK MVIA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits