YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30258884, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	367 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30258884, gi|....

Description	E-value	Query Range	Subject Range
ACKA_THEMA - Acetate kinase OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=ackA PE=1... ACKA_THEMA - Acetate kinase OS=Thermotoga maritima GN=ackA PE=1 SV=1	0.0	[5..364]	[2..388]
ACKA_CARHZ - Acetate kinase OS=Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 / Z-2901) GN=ack...	0.0	[5..364]	[2..385]
ACKA_THETC - Acetate kinase OS=Thermoanaerobacterium thermosaccharolyticum (strain ATCC 7956 / DSM 571 / NCIB 938... gi\|3006124 - gi\|3006124\|emb\|CAA06175.1\| acetate kinase [Thermoanaerobacterium thermosaccharolyticum]	0.0	[5..363]	[2..385]
ACKA_CLOTM - Acetate kinase (EC 2.7.2.1) (Acetokinase) - Clostridium thermocellum ACKA_CLOTH - Acetate kinase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 / NCIMB 10682... gi\|196196580, gi... - gi\|196254012\|ref\|ZP_03152607.1\| acetate kinase [Clostridium thermocellum DSM 4150], gi\|196196580\|gb\|...	0.0	[6..364]	[3..386]
gi\|106894728, gi... - gi\|158320480\|ref\|YP_001512987.1\| acetate kinase [Alkaliphilus oremlandii OhILAs], gi\|158140679\|gb\|AB...	0.0	[5..365]	[2..387]
ACKA_CALS8 - Acetate kinase OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903 / Tp8T 6331) GN...	0.0	[5..364]	[2..387]
ACKA_GEOKA - Acetate kinase OS=Geobacillus kaustophilus (strain HTA426) GN=ackA PE=3 SV=1 ACKA_GEOKA - Acetate kinase OS=Geobacillus kaustophilus GN=ackA PE=3 SV=1	0.0	[3..364]	[1..384]
gi\|114806041, gi... - gi\|167040565\|ref\|YP_001663550.1\| acetate kinase [Thermoanaerobacter sp. X514], gi\|166854805\|gb\|ABY93... gi\|242258459, gi... - gi\|242258459\|ref\|ZP_04803260.1\| acetate kinase [Thermoanaerobacter sp. X513], gi\|242230023\|gb\|EES324...	0.0	[5..364]	[2..388]
ACKA_BACCN - Acetate kinase OS=Bacillus cytotoxicus (strain DSM 22905 / CIP 110041 / 391-98 / NVH 391-98) GN=ackA...	0.0	[3..364]	[1..384]

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Predicted Domain #1

Region A:
Residues: [1-367]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVNRILVIN PGSTSTKIGV FDNERPVLEE TIRHDEEQIG KYKRIIDQYE FRKETILEVL  60
   61 HSHGINISKL NAVCGRGGLL RPIEGGTYTV NDAMLEDLKN GFSGHHASNL GGILAYEIAS 120
  121 GLNIPAFIVD PVVVDEMEPI ARISGIAGME RKSIFHALNQ KAVARKVAEE LNHKYEDLNL 180
  181 LVTHMGGGIT VGAHKKGKVI DVNNGLNGEG PFSPERAGTV PVGQLVEMCF SGEYYRDEMV 240
  241 KKLVGQGGLV SLIGTNDAIK VEQMVEKGDP EATLIYKAMA YQVAKEIGGA SAVLHGKIDA 300
  301 IVLTGGLAYS KILVDEIKER VDWIADVIVH PGEDELQALA EGALRVLREE EAPKEYIVRE 360
  361 KETVARG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	103.0
Match:	1x9jA
Description:	Structure of butyrate kinase 2 reveals both open- and citrate-induced closed conformations: implications for substrate-induced fit conformational changes
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
carbohydrate kinase activity	1.0449939978517	bayes_pls_golite062009
acetate kinase activity	1.02147739254786	bayes_pls_golite062009
catalytic activity	0.666924658593345	bayes_pls_golite062009
hexokinase activity	0.25631236070627	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: