YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30256892, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	324 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30256892, gi|....

Description	E-value	Query Range	Subject Range
gi\|52143208, gi\|... - gi\|52143208\|ref\|YP_083622.1\| hypothetical protein BCZK2030 [Bacillus cereus E33L], gi\|51976677\|gb\|AA...	1.0E-66	[1..324]	[100..423]
gi\|42781341, gi\|... - gi\|42781341\|ref\|NP_978588.1\| hypothetical protein BCE_2277 [Bacillus cereus ATCC 10987], gi\|42737263...	7.0E-66	[1..324]	[1..324]
gi\|47557240, gi\|... - gi\|47565604\|ref\|ZP_00236644.1\| outer membrane protein romA [Bacillus cereus G9241], gi\|47557240\|gb\|E...	3.0E-65	[1..324]	[1..324]
gi\|30020335, gi\|... - gi\|30020335\|ref\|NP_831966.1\| Outer membrane protein romA [Bacillus cereus ATCC 14579], gi\|29895886\|g...	2.0E-64	[1..324]	[3..326]
gi\|89153561, gi\|... - gi\|89208502\|ref\|ZP_01187005.1\| Beta-lactamase-like [Bacillus weihenstephanensis KBAB4], gi\|89153561\|...	1.0E-61	[1..324]	[1..324]
gi\|65319552 - gi\|65319552\|ref\|ZP_00392511.1\| COG2220: Predicted Zn-dependent hydrolases of the beta-lactamase fold...	2.0E-57	[1..278]	[3..280]
gi\|71897013, gi\|... - gi\|71897013\|ref\|NP_001025901.1\| N-acyl phosphatidylethanolamine phospholipase D [Gallus gallus], gi\|...	1.0E-53	[4..308]	[135..459]
gi\|89097962, gi\|... - gi\|89097962\|ref\|ZP_01170849.1\| hypothetical protein B14911_23522 [Bacillus sp. NRRL B-14911], gi\|890...	1.0E-53	[4..304]	[13..313]
gi\|26334279 - gi\|26334279\|dbj\|BAC30857.1\| unnamed protein product [Mus musculus]	7.0E-53	[4..315]	[63..394]
gi\|56380212, gi\|... - gi\|56420370\|ref\|YP_147688.1\| hypothetical protein GK1835 [Geobacillus kaustophilus HTA426], gi\|56380... gi\|47076795 - gi\|47076795\|dbj\|BAD18337.1\| unknown conserved protein [Geobacillus kaustophilus]	1.0E-52	[1..312]	[1..311]

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Predicted Domain #1

Region A:
Residues: [1-324]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKRYENMDN VSTKKSIRSF IRWRKERKQN KKDFSFLVEQ SPVKQSAFLQ NNVKKTTVTW  60
   61 IGHSTFLIQT NGLNILTDPV WANKLKLVPR LTEPGLSIKE LPKIDIVLLS HGHYDHLDFS 120
  121 TLRQLNDDVL YLVPIGLKKL FTRKKFNNVE EYKWWESTTI DNVSFHFVPA QHWTRRSLFD 180
  181 MNTSHWGGWI IKNDNMEETI YFCGDSGYFQ GFKEIGKRFS IDIALMPIGA YEPEWFMKIS 240
  241 HVSPEEAVQA YLDLHATHFI PMHYGAFALA DETPREAITR LRNNWNLRML PWEQLHVLFL 300
  301 GQTFTYNSET PTKKVNEKIE TLHV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.39794
Match:	1zkpA
Description:	1.5A Resolution Crystal Structure of a Metallo Beta Lactamase Family Protein, the ELAC Homolgue of Bacillus anthracis, a Putative Ribonuclease
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.174972734250133	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: