YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30261347, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	204 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30261347, gi|....

Description	E-value	Query Range	Subject Range
TRPF_BACC1 - N-(5'-phosphoribosyl)anthranilate isomerase OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=trpF...	1.0E-74	[1..204]	[1..204]
gi\|47569174, gi\|... - gi\|47569174\|ref\|ZP_00239861.1\| N-(5'phosphoribosyl)anthranilate isomerase [Bacillus cereus G9241], g...	3.0E-74	[1..204]	[1..204]
TRPF_BACCZ - N-(5'-phosphoribosyl)anthranilate isomerase OS=Bacillus cereus (strain ZK / E33L) GN=trpF PE=3 SV=1	8.0E-74	[1..204]	[1..204]
TRPF_BACCR - N-(5'-phosphoribosyl)anthranilate isomerase OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 215...	8.0E-72	[4..204]	[2..202]
TRPF_BACWK - N-(5'-phosphoribosyl)anthranilate isomerase OS=Bacillus weihenstephanensis (strain KBAB4) GN=trpF PE...	2.0E-71	[1..204]	[1..204]
TRPF_MOOTA - N-(5'-phosphoribosyl)anthranilate isomerase OS=Moorella thermoacetica (strain ATCC 39073) GN=trpF PE...	2.0E-65	[1..204]	[2..205]
gi\|95109835 - gi\|95109835\|emb\|CAK14540.1\| N-(5'-phosphoribosyl)anthranilate isomerase (PRAI) [Pseudomonas entomoph... TRPF_PSEE4 - N-(5'-phosphoribosyl)anthranilate isomerase OS=Pseudomonas entomophila (strain L48) GN=trpF PE=3 SV=...	2.0E-65	[1..202]	[4..206]
TRPF_GEOSL - N-(5'-phosphoribosyl)anthranilate isomerase OS=Geobacter sulfurreducens GN=trpF PE=3 SV=1 TRPF_GEOSL - N-(5'-phosphoribosyl)anthranilate isomerase OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 121...	2.0E-65	[1..202]	[2..203]
gi\|89097933, gi\|... - gi\|89097933\|ref\|ZP_01170820.1\| N-(5'-phosphoribosyl) anthranilate isomerase [Bacillus sp. NRRL B-149...	2.0E-64	[1..204]	[1..203]
TRPF_GEOMG - N-(5'-phosphoribosyl)anthranilate isomerase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 ...	2.0E-64	[1..201]	[2..202]

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Predicted Domain #1

Region A:
Residues: [1-204]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVKICGITD METAKRACEY GADALGFVFA ESKRKITPGL AKEIIQELPA NVLKIGVFVN  60
   61 ESVEVIQKIT GNCGLTHVQL HGGEDNHQIR RLNIPSIKSL GVTSESDMKN AQGYETDYIL 120
  121 FDSPKEKFHG GNGKTFPWEL LAHMPKELRE KTILAGGLNT LNIEEAIRTV RPYMVDVSSG 180
  181 VETEGKKDVE KIKQFIIKAK ECSK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	60.69897
Match:	1lbmA
Description:	N-(5'phosphoribosyl)antranilate isomerase, PRAI
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
tryptophan synthase activity	2.99898167480072	bayes_pls_golite062009
indole-3-glycerol-phosphate synthase activity	2.98379231184807	bayes_pls_golite062009
phosphoribosylanthranilate isomerase activity	2.57188946638955	bayes_pls_golite062009
catalytic activity	2.44231061702877	bayes_pls_golite062009
carbon-carbon lyase activity	1.80077901589281	bayes_pls_golite062009
carboxy-lyase activity	1.32677036501434	bayes_pls_golite062009
imidazoleglycerol-phosphate synthase activity	0.567370625225674	bayes_pls_golite062009
lyase activity	0.258652421339738	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: