YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30260445, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	441 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30260445, gi|....

Description	E-value	Query Range	Subject Range
gi\|67535384, gi\|... - gi\|67543205\|ref\|ZP_00421138.1\| Xanthine/uracil/vitamin C permease [Burkholderia vietnamiensis G4], g...	1.0E-65	[1..439]	[139..565]
gi\|113531013, gi... - gi\|116696514\|ref\|YP_842090.1\| major facilitator superfamily transporter AzgA family protein [Ralston...	5.0E-60	[1..440]	[29..456]
gi\|94314734, gi\|... - gi\|94314734\|ref\|YP_587943.1\| xanthine/uracil/vitamin C permease [Ralstonia metallidurans CH34], gi\|9...	6.0E-60	[1..440]	[24..451]
gi\|72122498, gi\|... - gi\|73539161\|ref\|YP_299528.1\| xanthine/uracil/vitamin C permease:sulphate transporter [Ralstonia eutr...	4.0E-59	[1..440]	[24..451]
gi\|56378632, gi\|... - gi\|56418790\|ref\|YP_146108.1\| hypothetical protein GK0255 [Geobacillus kaustophilus HTA426], gi\|56378...	9.0E-58	[1..439]	[1..439]
gi\|90413686, gi\|... - gi\|90413686\|ref\|ZP_01221675.1\| putative transporter [Photobacterium profundum 3TCK], gi\|90325307\|gb\|...	1.0E-57	[1..439]	[20..448]
gi\|54309433, gi\|... - gi\|54309433\|ref\|YP_130453.1\| putative transporter [Photobacterium profundum SS9], gi\|46913869\|emb\|CA...	2.0E-57	[1..439]	[20..448]
gi\|33601999, gi\|... - gi\|33601999\|ref\|NP_889559.1\| permease [Bordetella bronchiseptica RB50], gi\|33576437\|emb\|CAE33515.1\| ... gi\|33572434, gi\|... - gi\|33592786\|ref\|NP_880430.1\| permease [Bordetella pertussis Tohama I], gi\|33572434\|emb\|CAE42002.1\| p...	4.0E-57	[1..440]	[2..429]
gi\|33574024 - gi\|33574024\|emb\|CAE38347.1\| permease [Bordetella parapertussis] gi\|33597596 - gi\|33597596\|ref\|NP_885239.1\| permease [Bordetella parapertussis 12822]	2.0E-56	[1..440]	[2..429]
gi\|251812044, gi... - gi\|251812044\|ref\|ZP_04826517.1\| NCS2 family nucleobase:cation symporter-2 [Staphylococcus epidermidi... gi\|57638385, gi\|... - gi\|57867727\|ref\|YP_189398.1\| xanthine/uracil permease family protein [Staphylococcus epidermidis RP6... gi\|27468745, gi\|... - gi\|27468745\|ref\|NP_765382.1\| hypothetical protein SE1827 [Staphylococcus epidermidis ATCC 12228], gi...	2.0E-56	[1..441]	[1..444]

Back

Predicted Domain #1

Region A:
Residues: [1-166]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRYFQFDEL GTNYKTEFIA GLTTFLSMAY VLFVNPATLS LGNVKGLPAG TGMDPGAVFV  60
   61 ATALAAAIGS LIMGIFAKYP IALAPGMGIN AFFAYTAVLT MGIPWQTAIA GTLMSGIIFI 120
  121 ILTASGIREK IINAIPSELK FAVAAGIGLF IAFLGFQNAG IIVKND

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [167-245]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AVLVGLGDLT KGTTLLAIFG VVTTIIFMIK KVNGAVFYGM ILTAILGVAT GLIDTPKAVV  60
   61 GAIPSLEPTF GAALTHFGD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [246-441]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IFTVQMGIVI ITFFFIDFFD TAGTLVAVAN QAGLMKNNKL PRAGKALFAD AIATVIGAIL  60
   61 GTSTTTSYIE SSAGVAAGGR SGFTAVVTAG FFLLALFFSP LLSVVTPAVT APALIIVGIL 120
  121 MVSSLGEIDW KKFEIAVPAF FTIISMPLTY SIATGIAIGF IFYPITMVVS GRRKEIHPIM 180
  181 YVMGVLFVLY FIYVRK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits