YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30260200, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	640 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30260200, gi|....

Description	E-value	Query Range	Subject Range
gi\|52078497, gi\|... - gi\|52078497\|ref\|YP_077288.1\| DNA gyrase subunit B [Bacillus licheniformis ATCC 14580], gi\|52001708\|g...	0.0	[7..640]	[5..639]
GYRB_BACHD - DNA gyrase subunit B OS=Bacillus halodurans GN=gyrB PE=3 SV=1 gi\|11270951, gi\|... - gi\|2760177\|dbj\|BAA24187.1\| B subunit of DNA gyrase [Bacillus sp.], pir\|\|T46551 DNA topoisomerase (AT... GYRB_BACHD - DNA gyrase subunit B OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 ...	0.0	[1..640]	[1..637]
GYRB_BACSU - DNA gyrase subunit B OS=Bacillus subtilis GN=gyrB PE=3 SV=1 gi\|221312137 - gi\|221312137\|ref\|ZP_03593942.1\| DNA gyrase subunit B [Bacillus subtilis subsp. subtilis str. NCIB 36... GYRB_BACSU - DNA gyrase subunit B OS=Bacillus subtilis (strain 168) GN=gyrB PE=3 SV=1 gi\|221317070 - gi\|221317070\|ref\|ZP_03598364.1\| DNA gyrase subunit B [Bacillus subtilis subsp. subtilis str. JH642] gi\|221321333 - gi\|221321333\|ref\|ZP_03602627.1\| DNA gyrase subunit B [Bacillus subtilis subsp. subtilis str. SMY]	0.0	[5..640]	[2..638]
gi\|56418540, gi\|... - gi\|56418540\|ref\|YP_145858.1\| DNA gyrase subunit B [Geobacillus kaustophilus HTA426], gi\|56378382\|dbj...	0.0	[4..640]	[2..638]
gi\|88951625, gi\|... - gi\|88951625\|ref\|ZP_01154102.1\| DNA gyrase, B subunit [Methanosaeta thermophila PT], gi\|88929302\|gb\|E...	0.0	[6..640]	[1..628]
gi\|147921290, gi... - gi\|147921290\|ref\|YP_684896.1\| type II DNA topoisomerase II (gyrase), subunit B [uncultured methanoge...	0.0	[1..640]	[1..635]
gi\|89084169, gi\|... - gi\|89101114\|ref\|ZP_01173950.1\| DNA topoisomerase IV subunit B [Bacillus sp. NRRL B-14911], gi\|890841...	0.0	[1..640]	[1..640]
gi\|74490724, gi\|... - gi\|75761791\|ref\|ZP_00741726.1\| DNA gyrase subunit B [Bacillus thuringiensis serovar israelensis ATCC...	0.0	[1..640]	[6..645]
gi\|145408666, gi... - gi\|82499797\|ref\|ZP_00885234.1\| DNA gyrase, B subunit [Caldicellulosiruptor saccharolyticus DSM 8903]...	0.0	[1..640]	[1..637]

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Predicted Domain #1

Region A:
Residues: [1-401]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQKQMQENS YDESQIQVLE GLEAVRKRPG MYIGSTSGKG LHHLVWEIVD NSIDEALAGY  60
   61 CDEINVSIEE DNSIRVTDNG RGIPVGIQEK MGRPAVEVIM TVLHAGGKFG GGGYKVSGGL 120
  121 HGVGASVVNA LSTELEVFVH REGKIHYQKY ERGIPVADLK VIGDTDQTGT ITRFKPDPEI 180
  181 FQETTVYEFD TLATRMRELA FLNRNIKLTI EDKREHKQKK EFHYEGGIKS YVEHLNRSKQ 240
  241 PIHEEPVYVE GSKDGIQVEV SLQYNEGYTN NIYSFTNNIH TYEGGTHEVG FKTALTRVIN 300
  301 DYGRKNSILK DADSNLTGED VREGLTAIVS IKHPNPQFEG QTKTKLGNSE ARTITESVFS 360
  361 EAFEKFLLEN PNVARKIVEK GTMAARARVA AKKARELTRR K

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	161.0
Match:	1ei1A
Description:	DNA gyrase B
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [402-640]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SALEVSSLPG KLADCSSKDP AISEIYIVEG DSAGGSAKQG RDRHFQAILP LKGKIINVEK  60
   61 ARLDKILSND EVRTIITAIG TNIGGDFDIE KARYHKVIIM TDADVDGAHI RTLLLTFFYR 120
  121 YMRQIIEHGY IYIAQPPLFK VQQGKKIQYA YNEKELEKIL AELPAQPKPG IQRYKGLGEM 180
  181 NPTQLWETTM DPEVRSLLQV SLQDAIEADE TFEILMGDKV EPRRNFIQEN AKYVKNLDI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	60.69897
Match:	1bgwA
Description:	TOPOISOMERASE RESIDUES 410-1202,
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits