YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30265296, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	550 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30265296, gi|....

Description	E-value	Query Range	Subject Range
gi\|93452654, gi\|... - gi\|94266691\|ref\|ZP_01290365.1\| Glycosyl transferase, group 1 [delta proteobacterium MLMS-1], gi\|9345...	5.0E-57	[10..548]	[140..716]
gi\|20806796 - gi\|20806796\|ref\|NP_621967.1\| predicted glycosyltransferase [Thermoanaerobacter tengcongensis MB4] gi\|20806796, gi\|... - gi\|20806796\|ref\|NP_621967.1\| glycosyltransferase [Thermoanaerobacter tengcongensis MB4], gi\|20515259...	9.0E-57	[266..549]	[96..395]
gi\|166857219, gi... - gi\|76795460\|ref\|ZP_00777833.1\| Glycogen synthase, corynebacterial [Thermoanaerobacter ethanolicus AT... gi\|166853121, gi... - gi\|167038881\|ref\|YP_001661866.1\| glycogen synthase [Thermoanaerobacter sp. X514], gi\|166853121\|gb\|AB... gi\|242231503, gi... - gi\|242256969\|ref\|ZP_04801848.1\| glycogen synthase [Thermoanaerobacter sp. X513], gi\|242231503\|gb\|EES... gi\|241885025, gi... - gi\|241902563\|ref\|ZP_04787296.1\| glycogen synthase [Thermoanaerobacter brockii subsp. finnii Ako-1], ...	9.0E-57	[266..549]	[83..382]
gi\|41398164, gi\|... - gi\|41409344\|ref\|NP_962180.1\| hypothetical protein MAP3246 [Mycobacterium avium subsp. paratuberculos...	3.0E-56	[257..549]	[90..398]
gi\|33632236, gi\|... - gi\|33864713\|ref\|NP_896272.1\| glycosyltransferase group 1 [Synechococcus sp. WH 8102], gi\|33632236\|em...	8.0E-56	[1..549]	[140..731]
gi\|108764777, gi... - gi\|68561419\|ref\|ZP_00600716.1\| Glycosyl transferase, group 1 [Rubrobacter xylanophilus DSM 9941], gi...	9.0E-55	[248..549]	[67..369]
gi\|85667091 - gi\|85667091\|ref\|ZP_01029313.1\| hypothetical protein Badol_01000637 [Bifidobacterium adolescentis]	1.0E-54	[274..549]	[93..409]
gi\|23465401, gi\|... - gi\|23465401\|ref\|NP_696004.1\| glycosyltransferase [Bifidobacterium longum NCC2705], gi\|23326048\|gb\|AA...	1.0E-54	[274..549]	[94..410]
gi\|89210532, gi\|... - gi\|89210532\|ref\|ZP_01188920.1\| Glycogen synthase, corynebacterial [Halothermothrix orenii H 168], gi...	2.0E-54	[266..549]	[83..402]
gi\|46191182, gi\|... - gi\|46191182\|ref\|ZP_00120280.2\| COG0438: Glycosyltransferase [Bifidobacterium longum DJO10A], gi\|1894...	1.0E-53	[274..549]	[94..410]

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Predicted Domain #1

Region A:
Residues: [1-259]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKEYLKEVLD VSGEKFFILN PMIPNMDSNK PNFIIGKKSL IYTGKFAKDW NSDEILEAFA  60
   61 KIVRTNPDFR LIVAGDKFNL HPENPNFKEE VTQKLKTYKN VDWVGGVTRE EVQKLIQQSD 120
  121 IGIGWRNNSL NDSLELSTKA LEYGALGKPV ILNRTPMHER LFGSEYPFYA NSEEEFISCI 180
  181 TQSLTNDDIY ASAAETVYKV CTDFTFAKTY ERISPFLWEA KDKRIRLVFA GHDLKFAKMF 240
  241 IDRFASRTRY EVEIDQWKG

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	4.72
Match:	2iv7A
Description:	No description for 2iv7A was found.

Predicted functions:

Term	Confidence	Notes
catalytic activity	2.79847944596264	bayes_pls_golite062009
transferase activity, transferring hexosyl groups	2.47915110785572	bayes_pls_golite062009
transferase activity, transferring glycosyl groups	2.41430021878706	bayes_pls_golite062009
transferase activity	1.31366617478718	bayes_pls_golite062009
glucosyltransferase activity	1.12530590754652	bayes_pls_golite062009
UDP-N-acetylglucosamine 2-epimerase activity	1.0668884285508	bayes_pls_golite062009
UDP-glycosyltransferase activity	0.837469976647925	bayes_pls_golite062009
lipopolysaccharide heptosyltransferase activity	0.829748495581445	bayes_pls_golite062009
UDP-glucosyltransferase activity	0.749800470916129	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [260-550]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HSVNDESHST NCLNWADVIF CEWGLGNAVW YSHRVRQGQT LIVRMHLQER ETKHYLKFNY  60
   61 DAIDSIIAIS PYIRDEFVNN CGIPSDNMVM IYNAVNCKKF DLEKYEDTQF NLGITGICPS 120
  121 RKRLDRAIDI FEKLKEKDSR YTLHIKGQLP THYPWLWKKE EEKKYYEQVF KRINSSKWRD 180
  181 SIIFDGFGND MDTWFQKIGY ILSTSDFESF HLAPAEGMAS GAFPIIIRWE GCHTIYDEDF 240
  241 IFENVDEAAT FILKRNQVMG PNDIDVRTYV RNRFDIEKIF GDWEELIARL R

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.69897
Match:	2bisA
Description:	Structure of glycogen synthase from Pyrococcus abyssi
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transferase activity, transferring hexosyl groups	3.04530122157712	bayes_pls_golite062009
catalytic activity	3.02192459767177	bayes_pls_golite062009
transferase activity, transferring glycosyl groups	2.94500176353224	bayes_pls_golite062009
glucosyltransferase activity	1.70489839968253	bayes_pls_golite062009
UDP-N-acetylglucosamine 2-epimerase activity	1.63103907245982	bayes_pls_golite062009
transferase activity	1.60446326175569	bayes_pls_golite062009
lipopolysaccharide heptosyltransferase activity	1.38355990992668	bayes_pls_golite062009
UDP-glucosyltransferase activity	1.31935272422734	bayes_pls_golite062009
UDP-glycosyltransferase activity	1.30934991061674	bayes_pls_golite062009
phosphorylase activity	0.431662083250969	bayes_pls_golite062009
glycogen phosphorylase activity	0.36071680392511	bayes_pls_golite062009
racemase and epimerase activity, acting on carbohydrates and derivatives	0.27693350081385	bayes_pls_golite062009
glycogen (starch) synthase activity	0.26598547126437	bayes_pls_golite062009
alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity	0.12182953801646	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions:

Predicted functions: