YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|21397676, gi\|...
Organism:	Bacillus anthracis str. A2012
Length:	433 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|21397676, gi|....

Description	E-value	Query Range	Subject Range
PTJC_BACSU, PTCC... - Lichenan permease IIC component OS=Bacillus subtilis GN=licC PE=2 SV=1, (P46317) PTS system, lichena... gi\|221321062 - gi\|221321062\|ref\|ZP_03602356.1\| phosphotransferase system (PTS) lichenan-specific enzyme IIC compone... gi\|221316151 - gi\|221316151\|ref\|ZP_03597956.1\| phosphotransferase system (PTS) lichenan-specific enzyme IIC compone... gi\|221325347 - gi\|221325347\|ref\|ZP_03606641.1\| phosphotransferase system (PTS) lichenan-specific enzyme IIC compone... PTJC_BACSU - Lichenan permease IIC component OS=Bacillus subtilis (strain 168) GN=licC PE=2 SV=1	5.0E-74	[1..430]	[4..433]
gi\|52005586, gi\|... - gi\|52787765\|ref\|YP_093594.1\| LicC [Bacillus licheniformis ATCC 14580], gi\|52350267\|gb\|AAU42901.1\| Li...	1.0E-73	[2..432]	[5..435]
gi\|89086740, gi\|... - gi\|89098495\|ref\|ZP_01171378.1\| phosphotransferase system (PTS) lichenan-specific enzyme IIC componen...	2.0E-73	[1..430]	[4..433]
PTEC_GEOSE - Cellobiose permease IIC component OS=Geobacillus stearothermophilus GN=celB PE=3 SV=1	2.0E-70	[2..433]	[5..438]
gi\|75759427, gi\|... - gi\|75759427\|ref\|ZP_00739521.1\| PTS system, lichenan oligosaccharide-specific IIC component [Bacillus... gi\|228903687, gi... - gi\|228903687\|ref\|ZP_04067807.1\| Lichenan permease IIC component [Bacillus thuringiensis IBL 4222], g...	3.0E-70	[1..433]	[1..433]
gi\|254724361 - gi\|254724361\|ref\|ZP_05186145.1\| PTS system, cellobiose-specific IIC component [Bacillus anthracis st... gi\|228917818, gi... - gi\|228917818\|ref\|ZP_04081356.1\| Lichenan permease IIC component [Bacillus thuringiensis serovar puls... gi\|225789598, gi... - gi\|225867180\|ref\|YP_002752558.1\| PTS system, cellobiose-specific IIC component [Bacillus cereus 03BB... gi\|52140353, gi\|... - gi\|52140353\|ref\|YP_086478.1\| PTS system, cellobiose-specific IIC component [Bacillus cereus E33L], g...	4.0E-70	[1..433]	[1..433]
gi\|49331947, gi\|... - gi\|49480391\|ref\|YP_039204.1\| PTS system, cellobiose-specific IIC component [Bacillus thuringiensis s...	5.0E-69	[1..433]	[1..433]
gi\|42740302, gi\|... - gi\|42784370\|ref\|NP_981617.1\| PTS system, cellobiose-specific IIC component [Bacillus cereus ATCC 109...	3.0E-68	[1..433]	[1..433]
gi\|89157091, gi\|... - gi\|89205077\|ref\|ZP_01183650.1\| PTS lactose/cellobiose IIC component:PTS system cellobiose-specific I...	8.0E-68	[1..433]	[1..433]

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Predicted Domain #1

Region A:
Residues: [1-173]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRFLEKYVM PVAGKVAEQR HLQAIRDGII LTMPFLIIGS FFLIISALPI PGYNDFMAGL  60
   61 FGENWQRALG YPVSATFNIM ALIAVFGIAY RLGEYYKVDA LASGALSLVT FLLVTPFQVA 120
  121 YIIPSTKESV LVEGAIPAAL MGSQGLFVAM IIALISTELY RFIVQKKIII KMP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [174-332]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ETVPPAVTRS FAALVPGFIV VTVIWIVRLI IENTSFGSIH NIVGQILQEP LSVLGASLWG  60
   61 AIIAVILVHV LWSCGIHGAT IVGGVMSPVW LSLMDQNRVA FQAGQDVPNT ITAQFFDLWI 120
  121 YMGGSGATLA LVVGMLLFAR SQQLKSLGRL SIAPGIFNI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [333-433]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NEMVTFGMPI VMNPILLIPF ILVPVVLTIV SYFAMEWGLV ARPSGAAVPW TTPILFSGYL  60
   61 GSGGKISGVV LQLVNFALAF FIYLPFLKIW DKQKVAEEKG E

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits