YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30259903, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	357 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30259903, gi|....

Description	E-value	Query Range	Subject Range
gi\|49481160, gi\|... - gi\|49481160\|ref\|YP_039189.1\| glycosyl transferase family protein [Bacillus thuringiensis serovar kon...	2.0E-66	[1..357]	[1..357]
gi\|89157080, gi\|... - gi\|89205066\|ref\|ZP_01183639.1\| Glycosyl transferase, family 4 [Bacillus weihenstephanensis KBAB4], g...	3.0E-66	[1..357]	[1..357]
gi\|41583052, gi\|... - gi\|42518766\|ref\|NP_964696.1\| hypothetical protein LJ0841 [Lactobacillus johnsonii NCC 533], gi\|41583...	1.0E-65	[2..357]	[1..358]
gi\|23003229 - gi\|23003229\|ref\|ZP_00046896.1\| COG0472: UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-ac... gi\|226820658 - gi\|226820658\|ref\|ZP_03809777.1\| UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylgluc... gi\|116095546, gi... - gi\|23003229\|ref\|ZP_00046896.1\| hypothetical protein Lgas_03001201 [Lactobacillus gasseri ATCC 33323]...	2.0E-65	[2..357]	[1..358]
gi\|52140365, gi\|... - gi\|52140365\|ref\|YP_086465.1\| glycosyl transferase, group 4 family protein [Bacillus cereus E33L], gi...	3.0E-65	[1..357]	[1..357]
gi\|58336990, gi\|... - gi\|58336990\|ref\|YP_193575.1\| undecaprenyl-phosphaten-acetyl-glucosaminyltransfera se [Lactobacillus ... gi\|227868436, gi... - gi\|227903549\|ref\|ZP_04021354.1\| UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosp...	6.0E-65	[2..356]	[1..358]
gi\|75762871, gi\|... - gi\|75762871\|ref\|ZP_00742685.1\| Undecaprenyl-phosphate alpha-N-acetylglucosaminephosphotransferase [B... gi\|218542422, gi... - gi\|218900320\|ref\|YP_002448731.1\| glycosyl transferase, group 4 family protein [Bacillus cereus G9842... gi\|228848541, gi... - gi\|228911037\|ref\|ZP_04074844.1\| Teichoic acid linkage unit synthesis [Bacillus thuringiensis IBL 200... gi\|228903674, gi... - gi\|228903674\|ref\|ZP_04067794.1\| Teichoic acid linkage unit synthesis [Bacillus thuringiensis IBL 422... gi\|228968316, gi... - gi\|228968316\|ref\|ZP_04129313.1\| Teichoic acid linkage unit synthesis [Bacillus thuringiensis serovar...	9.0E-65	[1..357]	[1..357]
gi\|30023236, gi\|... - gi\|30023236\|ref\|NP_834867.1\| undecaprenyl-phosphate alpha-N-acetylglucosaminephosphotransferase [Bac... gi\|228635745, gi... - gi\|229147732\|ref\|ZP_04276075.1\| Teichoic acid linkage unit synthesis [Bacillus cereus BDRD-ST24], gi... gi\|229130448, gi... - gi\|229130448\|ref\|ZP_04259404.1\| Teichoic acid linkage unit synthesis [Bacillus cereus BDRD-Cer4], gi... gi\|228670742, gi... - gi\|229112610\|ref\|ZP_04242146.1\| Teichoic acid linkage unit synthesis [Bacillus cereus Rock1-15], gi\|... gi\|228722519, gi... - gi\|229050863\|ref\|ZP_04194415.1\| Teichoic acid linkage unit synthesis [Bacillus cereus AH676], gi\|228... gi\|228961439, gi... - gi\|228961439\|ref\|ZP_04123052.1\| Teichoic acid linkage unit synthesis [Bacillus thuringiensis serovar...	1.0E-64	[1..357]	[1..357]
gi\|104773711, gi... - gi\|104773711\|ref\|YP_618691.1\| putative undecaprenyl-phosphate N-acetyl-glucosaminyl transferase [Lac... gi\|12642648 - gi\|12642648\|gb\|AAK00329.1\|AF320250_2 RgpG [Lactobacillus delbrueckii] gi\|116093023, gi... - gi\|62515557\|ref\|ZP_00386961.1\| COG0472: UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-ac...	1.0E-64	[2..352]	[1..355]
gi\|42784356, gi\|... - gi\|42784356\|ref\|NP_981603.1\| glycosyl transferase, group 4 family protein [Bacillus cereus ATCC 1098...	3.0E-64	[5..357]	[1..353]

Back

Predicted Domain #1

Region A:
Residues: [1-264]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSQVIYAIL ASFITVLVVT PLVIKLAFKI GATDKPNARK VHQKIMPRLG GLAIFIGVAV  60
   61 GFVVGGLYEQ RMLSITLGAI IIVIIGILDD MYELSAKVKF GGQLLVAIMI VKSGLLVQVL 120
  121 YIPILGDTEL GWLAYPITVF WIVGITNAIN LIDGLDGLSA GISSIVLATL AYMAFTSPWG 180
  181 TGTAIILPLA LIALASTLGF LFYNFHPAKI FMGDTGALFL GYCISVISLL GLYKSVTLFS 240
  241 FIVPVIILGV PVFDTTFAII RRIV

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	55.236572
Match:	PF00953.12
Description:	No description for PF00953.12 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [265-357]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NKKPISAPDK SHLHHRLLAM GFSHRKTVLI IYAFGIFFSV NAIIFSSATL WLSIILLFIL  60
   61 IFFTEIIAEV IGLVHERYKP LISFYKKVKK RED

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits