YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30259813, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	316 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30259813, gi|....

Description	E-value	Query Range	Subject Range
gi\|13472783, gi\|... - gi\|14023530\|dbj\|BAB50136.1\| nucleoside hydrolase [Mesorhizobium loti MAFF303099], gi\|13472783\|ref\|NP...	3.0E-99	[2..313]	[4..312]
RIHA_SALPA - Pyrimidine-specific ribonucleoside hydrolase RihA OS=Salmonella paratyphi A (strain ATCC 9150 / SARB... RIHA_SALPA - Pyrimidine-specific ribonucleoside hydrolase rihA OS=Salmonella paratyphi A GN=rihA PE=3 SV=1 RIHA_SALPK - Pyrimidine-specific ribonucleoside hydrolase RihA OS=Salmonella paratyphi A (strain AKU_12601) GN=ri...	4.0E-98	[1..312]	[1..308]
gi\|237707382, gi... - gi\|237707382\|ref\|ZP_04537863.1\| pyrimidine-specific ribonucleoside hydrolase rihA [Escherichia sp. 3... gi\|26107024, gi\|... - gi\|26246625\|ref\|NP_752665.1\| Hypothetical protein ybeK [Escherichia coli CFT073], gi\|26107024\|gb\|AAN... gi\|91209692, gi\|... - gi\|91209692\|ref\|YP_539678.1\| hypothetical protein YbeK [Escherichia coli UTI89], gi\|91071266\|gb\|ABE0...	8.0E-98	[1..312]	[12..319]
gi\|146277154, gi... - gi\|83369561\|ref\|ZP_00914414.1\| inosine-uridine preferring nucleoside hydrolase [Rhodobacter sphaeroi...	1.0E-97	[2..313]	[4..312]
gi\|16759613 - gi\|16759613\|ref\|NP_455230.1\| ribonucleoside hydrolase 1 [Salmonella enterica subsp. enterica serovar... RIHA_SALTI - Pyrimidine-specific ribonucleoside hydrolase rihA OS=Salmonella typhi GN=rihA PE=3 SV=1 RIHA_SALPB - Pyrimidine-specific ribonucleoside hydrolase RihA OS=Salmonella paratyphi B (strain ATCC BAA-1250 / ... gi\|213052446 - gi\|213052446\|ref\|ZP_03345324.1\| ribonucleoside hydrolase 1 [Salmonella enterica subsp. enterica sero... gi\|213425082 - gi\|213425082\|ref\|ZP_03357832.1\| ribonucleoside hydrolase 1 [Salmonella enterica subsp. enterica sero... gi\|213647378 - gi\|213647378\|ref\|ZP_03377431.1\| ribonucleoside hydrolase 1 [Salmonella enterica subsp. enterica sero... RIHA_SALTI - Pyrimidine-specific ribonucleoside hydrolase RihA OS=Salmonella typhi GN=rihA PE=3 SV=1 gi\|29142614, gi\|... - gi\|29142614\|ref\|NP_805956.1\| ribonucleoside hydrolase 1 [Salmonella enterica subsp. enterica serovar... RIHA_SALPB - Pyrimidine-specific ribonucleoside hydrolase rihA OS=Salmonella paratyphi B (strain ATCC BAA-1250 / ... gi\|168264406, gi... - gi\|205347090\|gb\|EDZ33721.1\| inosine-uridine preferring nucleoside hydrolase [Salmonella enterica sub...	2.0E-97	[1..312]	[1..308]
RIHA_SALTY - Pyrimidine-specific ribonucleoside hydrolase RihA OS=Salmonella typhimurium (strain LT2 / SGSC1412 /... gi\|167990670, gi... - gi\|205330855\|gb\|EDZ17619.1\| inosine-uridine preferring nucleoside hydrolase [Salmonella enterica sub... RIHA_SALTY - Pyrimidine-specific ribonucleoside hydrolase rihA OS=Salmonella typhimurium GN=rihA PE=3 SV=1 lcl\|NC_016856.1_... - [gene=rihA] [protein=ribonucleoside hydrolase 1] [protein_id=YP_005236376.1] [location=complement(72... RIHA_SALTY - Pyrimidine-specific ribonucleoside hydrolase rihA OS=Salmonella typhimurium GN=rihA PE=3 SV=1	2.0E-97	[1..312]	[1..308]
gi\|77387889, gi\|... - gi\|77463471\|ref\|YP_352975.1\| nucleoside hydrolase [Rhodobacter sphaeroides 2.4.1], gi\|77387889\|gb\|AB...	4.0E-97	[2..313]	[4..312]
RIHA_SHIB3 - Pyrimidine-specific ribonucleoside hydrolase RihA OS=Shigella boydii serotype 18 (strain CDC 3083-94...	4.0E-97	[1..312]	[1..308]
gi\|168786501, gi... - gi\|189373662\|gb\|EDU92078.1\| inosine-uridine preferring nucleoside hydrolase [Escherichia coli O157:H... gi\|168802439, gi... - gi\|189375581\|gb\|EDU93997.1\| inosine-uridine preferring nucleoside hydrolase [Escherichia coli O157:H... gi\|195939389 - gi\|195939389\|ref\|ZP_03084771.1\| ribonucleoside hydrolase 1 [Escherichia coli O157:H7 str. EC4024] gi\|208725560, gi... - gi\|208805759\|ref\|ZP_03248096.1\| inosine-uridine preferring nucleoside hydrolase [Escherichia coli O1... gi\|208815054, gi... - gi\|208815054\|ref\|ZP_03256233.1\| inosine-uridine preferring nucleoside hydrolase [Escherichia coli O1... gi\|208822967, gi... - gi\|208822967\|ref\|ZP_03263285.1\| inosine-uridine preferring nucleoside hydrolase [Escherichia coli O1... RIHA_ECO5E - Pyrimidine-specific ribonucleoside hydrolase RihA OS=Escherichia coli O157:H7 (strain EC4115 / EHEC)... gi\|217320943, gi... - gi\|217324722\|ref\|ZP_03440806.1\| inosine-uridine preferring nucleoside hydrolase [Escherichia coli O1... gi\|188013882, gi... - gi\|188013882\|gb\|EDU52004.1\| inosine-uridine preferring nucleoside hydrolase [Escherichia coli O157:H... gi\|13360148, gi\|... - gi\|15829944\|ref\|NP_308717.1\| ribonucleoside hydrolase 1 [Escherichia coli O157:H7 str. Sakai], gi\|13... gi\|189354849, gi... - gi\|189354849\|gb\|EDU73268.1\| inosine-uridine preferring nucleoside hydrolase [Escherichia coli O157:H... gi\|189365377, gi... - gi\|189365377\|gb\|EDU83793.1\| inosine-uridine preferring nucleoside hydrolase [Escherichia coli O157:H... gi\|189363460, gi... - gi\|189363460\|gb\|EDU81879.1\| inosine-uridine preferring nucleoside hydrolase [Escherichia coli O157:H... gi\|187767178, gi... - gi\|187767178\|gb\|EDU31022.1\| inosine-uridine preferring nucleoside hydrolase [Escherichia coli O157:H... gi\|168779142, gi... - gi\|189003131\|gb\|EDU72117.1\| inosine-uridine preferring nucleoside hydrolase [Escherichia coli O157:H... gi\|254591215, gi... - gi\|254791815\|ref\|YP_003076652.1\| ribonucleoside hydrolase 1 [Escherichia coli O157:H7 str. TW14359],... RIHA_ECO57 - Pyrimidine-specific ribonucleoside hydrolase RihA OS=Escherichia coli O157:H7 GN=rihA PE=3 SV=1 gi\|209776950, gi... - pir\|\|E85565 probable tRNA synthetase ybeK [imported] - Escherichia coli (strain O157:H7, substrain ... gi\|194417295, gi... - gi\|83569108\|ref\|ZP_00920568.1\| COG1957: Inosine-uridine nucleoside N-ribohydrolase [Shigella dysente... gi\|12513558, gi\|... - gi\|15800365\|ref\|NP_286377.1\| ribonucleoside hydrolase 1 [Escherichia coli O157:H7 EDL933], gi\|125135...	5.0E-97	[1..312]	[1..308]
RIHA_ECOLI, YBEK... - (P41409) Hypothetical protein ybeK, Pyrimidine-specific ribonucleoside hydrolase rihA (EC 3.2.-.-) (... RIHA_ECOBW - Pyrimidine-specific ribonucleoside hydrolase RihA OS=Escherichia coli (strain K12 / MC4100 / BW2952)... EG12701 - ribonucleoside hydrolase 1 / Ribonucleoside hydrolase, pyrimidine specific gi\|170080230, gi... - gi\|170080331\|ref\|YP_001729651.1\| ribonucleoside hydrolase 1 [Escherichia coli str. K-12 substr. DH10... gi\|194439885, gi... - gi\|83584753\|ref\|ZP_00923416.1\| COG1957: Inosine-uridine nucleoside N-ribohydrolase [Escherichia coli... gi\|4062271, gi\|8... - gi\|89107520\|ref\|AP_001300.1\| ribonucleoside hydrolase 1 [Escherichia coli str. K-12 substr. W3110], ... gi\|253972630, gi... - gi\|254160729\|ref\|YP_003043837.1\| ribonucleoside hydrolase 1 [Escherichia coli B str. REL606], gi\|253... gi\|253976824, gi... - gi\|254287517\|ref\|YP_003053265.1\| ribonucleoside hydrolase 1 [Escherichia coli BL21(DE3)], gi\|2539768... gi\|242376421, gi... - gi\|251784148\|ref\|YP_002998452.1\| hypothetical protein B21_00606 [Escherichia coli BL21], gi\|24237642... EG12701 - ribonucleoside hydrolase 1 / Ribonucleoside hydrolase, pyrimidine specific	5.0E-97	[1..312]	[1..308]

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Predicted Domain #1

Region A:
Residues: [1-316]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKKVLIFCD PGIDDTMALL LAFFIDEIEI IGIVADYGNV PKKMAVQNAH FLKNETRNRN  60
   61 IKIFGGSERP LTGAPPAFFT EVHGKQGLGP IIPNGNVTNG EMENFFEVIP LIEQYKDELI 120
  121 IVSLGRLTSL AILFIMCKQL MKQIKSYYVM GGAFLHPGNV TPISEANFYG DPTAANIVLQ 180
  181 SAANMYIYPL NVTQYSVITP EMAEYIEAKG KVPLVKPLFD HYYYGYYKNA LPDLKGSPFH 240
  241 DTMPILALLD NSMFTYHKSP IVVMAESYAQ GASIGEFRSL GKPKPFMDWP SHQIAIDFDY 300
  301 NRFFKHFMSL MTGEQF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	98.522879
Match:	1yoeA
Description:	Crystal structure of a the E. coli pyrimidine nucleoside hydrolase YbeK with bound ribose
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits