YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30259626, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	207 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30259626, gi|....

Description	E-value	Query Range	Subject Range
gi\|229135740, gi... - gi\|229135740\|ref\|ZP_04264512.1\| Sporulation inhibitor KapD [Bacillus cereus BDRD-ST196], gi\|22864770... gi\|229014099, gi... - gi\|229014099\|ref\|ZP_04171221.1\| Sporulation inhibitor KapD [Bacillus mycoides DSM 2048], gi\|22874720... gi\|89156016, gi\|... - gi\|89206114\|ref\|ZP_01184677.1\| Exonuclease [Bacillus weihenstephanensis KBAB4], gi\|89156016\|gb\|EAR76...	4.0E-43	[1..207]	[1..207]
gi\|228910746, gi... - gi\|228910746\|ref\|ZP_04074555.1\| Sporulation inhibitor KapD [Bacillus thuringiensis IBL 200], gi\|2288... gi\|228856231, gi... - gi\|228903410\|ref\|ZP_04067538.1\| Sporulation inhibitor KapD [Bacillus thuringiensis IBL 4222], gi\|228... gi\|228961163, gi... - gi\|228961163\|ref\|ZP_04122785.1\| Sporulation inhibitor KapD [Bacillus thuringiensis serovar pakistani... gi\|74492248, gi\|... - gi\|75760253\|ref\|ZP_00740306.1\| Exonuclease KapD [Bacillus thuringiensis serovar israelensis ATCC 356... gi\|228923644, gi... - gi\|228923644\|ref\|ZP_04086923.1\| Sporulation inhibitor KapD [Bacillus thuringiensis serovar huazhonge... gi\|229048603, gi... - gi\|229048603\|ref\|ZP_04194161.1\| Sporulation inhibitor KapD [Bacillus cereus AH676], gi\|228722722\|gb\|... gi\|228791686, gi... - gi\|228968015\|ref\|ZP_04129023.1\| Sporulation inhibitor KapD [Bacillus thuringiensis serovar sotto str... gi\|229130170, gi... - gi\|229130170\|ref\|ZP_04259130.1\| Sporulation inhibitor KapD [Bacillus cereus BDRD-Cer4], gi\|228653284... gi\|229112353, gi... - gi\|229112353\|ref\|ZP_04241891.1\| Sporulation inhibitor KapD [Bacillus cereus Rock1-15], gi\|228671001\|... gi\|228630364, gi... - gi\|229153098\|ref\|ZP_04281278.1\| Sporulation inhibitor KapD [Bacillus cereus m1550], gi\|228630364\|gb\|... gi\|228636007, gi... - gi\|229147462\|ref\|ZP_04275810.1\| Sporulation inhibitor KapD [Bacillus cereus BDRD-ST24], gi\|228636007... gi\|218234761, gi... - gi\|218234761\|ref\|YP_002369702.1\| sporulation inhibitor KapD [Bacillus cereus B4264], gi\|218162718\|gb... gi\|218900061, gi... - gi\|218900061\|ref\|YP_002448472.1\| sporulation inhibitor KapD [Bacillus cereus G9842], gi\|218544233\|gb... gi\|29898511, gi\|... - gi\|30022952\|ref\|NP_834583.1\| sporulation inhibitor KapD [Bacillus cereus ATCC 14579], gi\|29898511\|gb...	4.0E-43	[1..207]	[1..207]
gi\|51974086, gi\|... - gi\|52140617\|ref\|YP_086215.1\| sporulation inhibitor KapD [Bacillus cereus E33L], gi\|51974086\|gb\|AAU15... gi\|47566945, gi\|... - gi\|47566945\|ref\|ZP_00237662.1\| exonuclease KapD [Bacillus cereus G9241], gi\|47556263\|gb\|EAL14597.1\| ... gi\|229158512, gi... - gi\|229158512\|ref\|ZP_04286572.1\| Sporulation inhibitor KapD [Bacillus cereus ATCC 4342], gi\|228624948...	7.0E-43	[1..207]	[1..207]
gi\|42740026, gi\|... - gi\|42784095\|ref\|NP_981342.1\| sporulation inhibitor KapD [Bacillus cereus ATCC 10987], gi\|42740026\|gb... gi\|222098364, gi... - gi\|222098364\|ref\|YP_002532422.1\| sporulation inhibitor KapD [Bacillus cereus Q1], gi\|221242423\|gb\|AC... gi\|217962377, gi... - gi\|217962377\|ref\|YP_002340949.1\| sporulation inhibitor KapD [Bacillus cereus AH187], gi\|217065516\|gb... gi\|206976439, gi... - gi\|206976439\|ref\|ZP_03237346.1\| sporulation inhibitor KapD [Bacillus cereus H3081.97], gi\|206745363\|... gi\|229141628, gi... - gi\|229141628\|ref\|ZP_04270159.1\| Sporulation inhibitor KapD [Bacillus cereus BDRD-ST26], gi\|228641826... gi\|228584331, gi... - gi\|229199060\|ref\|ZP_04325743.1\| Sporulation inhibitor KapD [Bacillus cereus m1293], gi\|228584331\|gb\|...	1.0E-42	[1..207]	[1..207]
gi\|152976184, gi... - gi\|89203212\|ref\|ZP_01181903.1\| DNA polymerase III, epsilon subunit:DNA polymerase III, alpha subunit...	5.0E-42	[1..203]	[413..604]
gi\|118480004, gi... - gi\|118480004\|ref\|YP_897155.1\| sporulation inhibitor KapD [Bacillus thuringiensis str. Al Hakam], gi\|... gi\|228596320, gi... - gi\|229187151\|ref\|ZP_04314297.1\| Sporulation inhibitor KapD [Bacillus cereus BGSC 6E1], gi\|228596320\|... gi\|49331899, gi\|... - gi\|49480343\|ref\|YP_038931.1\| sporulation inhibitor KapD [Bacillus thuringiensis serovar konkukian st... gi\|229094008, gi... - gi\|229094008\|ref\|ZP_04225095.1\| Sporulation inhibitor KapD [Bacillus cereus Rock3-42], gi\|228689392\|...	6.0E-42	[1..207]	[1..207]
DPO3_STAAR - DNA polymerase III PolC-type OS=Staphylococcus aureus (strain MRSA252) GN=polC PE=3 SV=1	4.0E-41	[1..205]	[417..610]
DPO3_STAA3 - DNA polymerase III PolC-type OS=Staphylococcus aureus (strain USA300) GN=polC PE=3 SV=1 gi\|160368239, gi... - gi\|161509430\|ref\|YP_001575089.1\| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus USA300... gi\|87161645\|ref\|... - DNA polymerase III, alpha subunit [Staphylococcus aureus subsp. aureus USA300], DNA polymerase III, ... gi\|57286020, gi\|... - gi\|57651834\|ref\|YP_186140.1\| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus COL], gi\|5... DPO3_STAA8 - DNA polymerase III PolC-type OS=Staphylococcus aureus (strain NCTC 8325) GN=polC PE=3 SV=1 DPO3_STAAU - (P68851) DNA polymerase III polC-type (EC 2.7.7.7) (PolIII) DPO3_STAAW - DNA polymerase III PolC-type OS=Staphylococcus aureus (strain MW2) GN=polC PE=3 SV=1	4.0E-41	[1..205]	[415..608]
gi\|90583510, gi\|... - gi\|90583510\|ref\|ZP_01239266.1\| DNA polymerase III, epsilon subunit:DNA polymerase III, alpha subunit... gi\|90586568, gi\|... - gi\|90586568\|ref\|ZP_01242262.1\| DNA polymerase III, epsilon subunit:DNA polymerase III, alpha subunit... DPO3_STAAM - DNA polymerase III PolC-type OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=polC PE=3 SV=1 gi\|255006051 - gi\|255006051\|ref\|ZP_05144652.2\| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus Mu50-om... gi\|253315620 - gi\|253315620\|ref\|ZP_04838833.1\| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus str. CF... gi\|25312569 - pir\|\|C89900 DNA polymerase III, alpha chain PolC-type [imported] - Staphylococcus aureus (strain N31... DPO3_STAAN - DNA polymerase III PolC-type OS=Staphylococcus aureus (strain N315) GN=polC PE=1 SV=1 DPO3_STAA1 - DNA polymerase III PolC-type OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=polC PE=3 SV=1	4.0E-41	[1..205]	[417..610]
DPO3_STAAS - DNA polymerase III PolC-type OS=Staphylococcus aureus (strain MSSA476) GN=polC PE=3 SV=1 gi\|21282876, gi\|... - gi\|21282876\|ref\|NP_645964.1\| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus MW2], gi\|2... gi\|221142498 - gi\|221142498\|ref\|ZP_03566991.1\| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus str. JK... gi\|221138152 - gi\|221138152\|ref\|ZP_03562954.1\| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus str. JK... DPO3_STAAE - DNA polymerase III PolC-type OS=Staphylococcus aureus (strain Newman) GN=polC PE=3 SV=1 DPO3_STAAC - DNA polymerase III PolC-type OS=Staphylococcus aureus (strain COL) GN=polC PE=3 SV=2	4.0E-41	[1..205]	[417..610]

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Predicted Domain #1

Region A:
Residues: [1-207]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDEQRFLFLD FEFTMPQHRK KPKGFFPEII EVGLVSVVGC KVEDTYSAHV RPKTFPSLTD  60
   61 RCKKFLGIKQ EVVDKGISFS ELVEKLAEYE KRCKPTIVTW GNMDMKVLKH NCEKAGVDFP 120
  121 FLGQCRDLSL EYKKFFGERN QTGLWKAIEA YGKVGTGKHH CALDDAMTTY NIFKLVEKDK 180
  181 EYLVKPAPPT LGELVDFSKV LKKVSTQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.09691
Match:	2guiA
Description:	No description for 2guiA was found.

Predicted functions:

Term	Confidence	Notes
nuclease activity	0.651268847169813	bayes_pls_golite062009
hydrolase activity, acting on ester bonds	0.472452351863913	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: