YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30264907, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	338 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30264907, gi|....

Description	E-value	Query Range	Subject Range
gi\|28203058, gi\|... - gi\|28210620\|ref\|NP_781564.1\| ribokinase [Clostridium tetani E88], gi\|28203058\|gb\|AAO35501.1\| ribokin...	1.0E-64	[1..332]	[1..306]
SCRK6_ARATH - Probable fructokinase-6, chloroplastic OS=Arabidopsis thaliana GN=At1g66430 PE=2 SV=1	5.0E-63	[2..332]	[63..382]
gi\|82724628, gi\|... - gi\|82747543\|ref\|ZP_00910039.1\| 2-keto-3-deoxygluconate kinase [Clostridium beijerincki NCIMB 8052], ...	7.0E-62	[4..338]	[2..315]
gi\|166857191, gi... - gi\|76795431\|ref\|ZP_00777804.1\| PfkB [Thermoanaerobacter ethanolicus ATCC 33223], gi\|76589239\|gb\|EAO6... gi\|241885055, gi... - gi\|241902593\|ref\|ZP_04787326.1\| PfkB domain protein [Thermoanaerobacter brockii subsp. finnii Ako-1]...	4.0E-61	[4..338]	[3..316]
gi\|52424338, gi\|... - gi\|52424338\|ref\|YP_087475.1\| RbsK protein [Mannheimia succiniciproducens MBEL55E], gi\|52306390\|gb\|AA...	1.0E-60	[3..334]	[6..310]
gi\|89159959, gi\|... - gi\|89210516\|ref\|ZP_01188905.1\| PfkB [Halothermothrix orenii H 168], gi\|89159959\|gb\|EAR79618.1\| PfkB ...	2.0E-60	[3..327]	[14..332]
RBSK_HAEIN - Ribokinase OS=Haemophilus influenzae GN=rbsK PE=3 SV=1 RBSK_HAEIN - Ribokinase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=rbsK PE=3 SV=1	2.0E-60	[1..333]	[1..306]
gi\|53733298 - gi\|53733298\|ref\|ZP_00156334.2\| COG0524: Sugar kinases, ribokinase family [Haemophilus influenzae R28... gi\|145272173, gi... - gi\|145638578\|ref\|ZP_01794187.1\| ribokinase [Haemophilus influenzae PittII], gi\|145272173\|gb\|EDK12081...	3.0E-60	[1..333]	[1..306]
gi\|7434220, gi\|2... - pir\|\|T07588 fructokinase (EC 2.7.1.4) 1 - tomato, gi\|2102691\|gb\|AAB57733.1\| fructokinase	5.0E-60	[2..332]	[25..344]

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Predicted Domain #1

Region A:
Residues: [1-338]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKKIAAFGE VMMRLQVPGY ELLSQANTLK YSFSGTGVNV AAALSHLGHE GFLISTLPEN  60
   61 SVGDAALSYI QKLGVQTSLV SRGGKYVGMY FLENGFGARA SRVTYSNRLE SSFNTACEEM 120
  121 YQFEEIAKEI DIVHFCGITL AMNDTVRHHM KSLAKAVKEN GGTVVFDCNY RPSLWGEDGY 180
  181 EQAKPHYEEM LDLADIVMMN EKDAMFVLGM KTEETEREEQ LVDLIPQVAE TYHIATIAGT 240
  241 HRSINSDNTH SLRGFICKDG AFTFAKTLTF SVYDRIGAGD AYTSGIIHGE IEEFAPEKAV 300
  301 SFASAAGMLA HTIVGDTPMS SEKDILRAMT ASVGDVER

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	53.69897
Match:	2afbA
Description:	Crystal structure of 2-dehydro-3- deoxygluconokinase (EC 2.7.1.45) (tm0067) from THERMOTOGA MARITIMA at 2.05 A resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	2.11518580948187	bayes_pls_golite062009
carbohydrate kinase activity	1.99025603598964	bayes_pls_golite062009
transferase activity	1.58275215443259	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	1.52797447577434	bayes_pls_golite062009
kinase activity	1.43108899715499	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: