YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30259497, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	224 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30259497, gi|....

Description	E-value	Query Range	Subject Range
gi\|49330302, gi\|... - gi\|49478746\|ref\|YP_038797.1\| aspartate racemase [Bacillus thuringiensis serovar konkukian str. 97-27...	6.0E-53	[1..219]	[1..219]
gi\|25291677 - pir\|\|AF1818 glutamate racemase [imported] - Nostoc sp. (strain PCC 7120) MURI_NOSS1 - Glutamate racemase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=murI PE=3 SV=1	6.0E-53	[2..223]	[24..242]
gi\|186682253, gi... - gi\|23125873\|ref\|ZP_00107790.1\| COG0796: Glutamate racemase [Nostoc punctiforme PCC 73102], gi\|186682...	6.0E-53	[2..223]	[24..242]
MURI_ANAVT - Glutamate racemase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=murI PE=3 SV=1	7.0E-53	[2..223]	[24..242]
gi\|52140751, gi\|... - gi\|52140751\|ref\|YP_086078.1\| aspartate racemase [Bacillus cereus E33L], gi\|51974220\|gb\|AAU15770.1\| a...	1.0E-51	[1..219]	[1..219]
gi\|30022823, gi\|... - gi\|30022823\|ref\|NP_834454.1\| aspartate racemase [Bacillus cereus ATCC 14579], gi\|29898382\|gb\|AAP1165... gi\|229130032, gi... - gi\|229130032\|ref\|ZP_04258996.1\| amino-acid racemase [Bacillus cereus BDRD-Cer4], gi\|228653476\|gb\|EEL...	1.0E-51	[1..224]	[1..224]
gi\|56686710, gi\|... - gi\|56751751\|ref\|YP_172452.1\| glutamate racemase [Synechococcus elongatus PCC 6301], gi\|56686710\|dbj\|... gi\|81170051, gi\|... - gi\|81301170\|ref\|YP_401378.1\| glutamate racemase [Synechococcus elongatus PCC 7942], gi\|81170051\|gb\|A...	3.0E-51	[2..221]	[16..232]
gi\|74489131, gi\|... - gi\|75763381\|ref\|ZP_00743116.1\| Aspartate racemase [Bacillus thuringiensis serovar israelensis ATCC 3...	4.0E-51	[1..222]	[12..233]
gi\|38174839, gi\|... - gi\|38174839\|emb\|CAD70220.1\| glutamate racemase [Microcystis aeruginosa PCC 7806], gi\|159027640\|emb\|C... gi\|38174839 - gi\|38174839\|emb\|CAD70220.1\| glutamate racemase [Microcystis aeruginosa PCC 7806]	5.0E-51	[2..223]	[9..228]
gi\|67921667, gi\|... - gi\|67921667\|ref\|ZP_00515185.1\| Glutamate racemase [Crocosphaera watsonii WH 8501], gi\|67856779\|gb\|EA...	8.0E-51	[2..221]	[9..225]

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Predicted Domain #1

Region A:
Residues: [1-224]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIGILAGMGP KSTGPFVDTV VAECQTIYGA KHDMDFPHMM IYSCPTPFYM DRPIDHEAMK  60
   61 KAIIEGAQKL ESTGAGFIAM SCNTAHLYFE ELQQSLSIPI LNIVDETLKA IPETAKRVAL 120
  121 LETEATVQAG IYQDGIAKRN IEYIHYEQWQ ESINQIITYI KSGEVEEARE LWSALVLQLK 180
  181 DEVDTAIIAC TDLNVVASED FVDSAQCLAK AVVRMYLSNT KRSS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.154902
Match:	1jflA
Description:	Aspartate racemase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
amino-acid racemase activity	2.90720104679159	bayes_pls_golite062009
catalytic activity	2.23803491380613	bayes_pls_golite062009
racemase and epimerase activity, acting on amino acids and derivatives	2.22366698449436	bayes_pls_golite062009
racemase and epimerase activity	1.27862675908625	bayes_pls_golite062009
isomerase activity	1.2605238470626	bayes_pls_golite062009
glutamate racemase activity	0.339023186651145	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: